Job Description P51813 Confidence 97.56% Date Fri May 25 10:09:19 BST 2012 Rank 493 Aligned Residues 81 % Identity 21% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.							.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																				.																															.	.	.	.	.	.
Query SS confidence																																				.																															.	.	.	.	.	.
Query Sequence		D	Y	D	W	F	A	G	N	I	S	R	S	Q	S	E	Q	L	L	R	Q	K	G	K	E	G	A	F	M	V	R	N	S	S	Q	.	V	G	M	Y	T	V	S	L	F	S	K	A	V	N	D	K	K	G	T	V	K	H	Y	H	V	H	T	N	A	E	.	.	.	.	.	.	N	K	L	Y	L	A	E	N	Y
Query Conservation																																				.																															.	.	.	.	.	.
Alig confidence								.																.												.											.	.	.	.	.																.	.	.	.	.	.
Template Conservation								.																.																							.	.	.	.	.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	.	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	.	.	.	.	.	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q
Template Known Secondary structure				T	T			.												T	T	S		.	T	T								S	S		T	T									.	.	.	.	.		T	T											S		S	S	T	T	S			S					T	T
Template Predicted Secondary structure								.																.																							.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.						.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		C	F	D	S	I	P	K	L	I	H	Y	H	Q	H	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q	N
Template Known Secondary structure				S	S								T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions