Job Description A0PJZ0 Confidence 99.65% Date Wed May 9 17:33:58 BST 2012 Rank 39 Aligned Residues 126 % Identity 28% Template c3v30A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:dna-binding protein rfxank; PDBTitle: crystal structure of the peptide bound complex of the ankyrin repeat2 domains of human rfxank Resolution 1.57 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																																		80	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	H	K	A	A	V	K	G	D	A	A	E	M	E	R	C	L	A	R	R	S	G	D	L	D	A	L	D	K	Q	H	R	T	A	L	H	L	A	C	A	S	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	V
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	H	Q	L	A	A	Q	G	E	L	D	Q	L	K	E	H	L	R	K	G	D	N	L	V	N	K	P	D	E	R	G	F	T	P	L	I	W	A	S	A	F	G	E	I	E	T	V	R	F	L	L	E	W	G	A	D	P	H	I	L	A	K	E	R	E	S	A	L	S	L	A	S	T	G	G	Y	T	D	I
Template Known Secondary structure									T	T										T	T		S	G	G	G	G				T	T	S										T	T												T			T	T				T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	L	L	V	N	R	K	C	Q	I	D	I	Y	D	K	E	N	R	T	P	L	I	Q	A	V	H	C	Q	E	E	A	C	A	V	I	L	L	E	H	G	A	N	P	N	L	K	D	I	Y	G	N	T	A	L	H	Y	A	V	Y	S	E	S	T	S	L	A	E	K	L	L	F	H	G	E	N	I	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	L	L	L	E	R	D	V	D	I	N	I	Y	D	W	N	G	G	T	P	L	L	Y	A	V	R	G	N	H	V	K	C	V	E	A	L	L	A	R	G	A	D	L	T	T	E	A	D	S	G	Y	T	P	M	D	L	A	V	A	L	G	Y	R	K	V	Q	Q	V	I	E	N	H	I	L	K	L	F	Q
Template Known Secondary structure							T	T	T			T	T				T	T	S										T	T											T	T			T	T				T	T	S											T																S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions