Job Description A0PJZ0 Confidence 99.41% Date Wed May 9 17:33:58 BST 2012 Rank 62 Aligned Residues 153 % Identity 12% Template c3jxiA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																										.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	F	G	F	R	S	R	R	G	Q	T	V	L	G	S	I	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	T	G	S	G	Y	R	I	R	Y	S	E	L	Q	K	I	H	K	A	A	V	K	G	D	A	A	E	M	E	R	C	L	A	R	R
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation																																																																															.
Template Sequence		D	E	E	F	R	E	P	S	T	G	K	T	C	L	P	K	A	L	L	N	L	S	A	G	R	N	D	T	I	P	I	L	L	D	I	A	E	K	T	G	N	M	R	E	F	I	N	S	P	F	R	D	V	Y	Y	R	G	Q	T	A	L	H	I	A	I	E	R	R	C	K	H	Y	V	E	L	L	V	.	E	K
Template Known Secondary structure		S	G	G	G	S		T	T	T										T	S		B	T	T	B		T												T	T							T			B			S	S			S	B									T	T										.		T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																																		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	D	L	D	A	L	D	K	Q	H	R	T	A	L	H	L	A	C	A	S	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	V	V	T	L	L	V	N	R	K	C	Q	I	D	I	Y	D	K	E	N	R	T	P
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	D	V	H	A	Q	A	R	G	R	F	F	Q	P	K	D	E	G	G	Y	F	Y	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	P	H	I	V	H	Y	L	T	E	N	G	H	K	Q	A	D	L	R	R	Q	D	S	R	G	N	T	V	L	H	A	L	V	A	I	A	D	N	T	R	E	N	T	K
Template Known Secondary structure		T			T	T									S	S	S					S			S		S	S								T	T												S	S					T	T				T	T	S													S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	Q	A	V	H	C	Q	E	E	A	C	A	V	I	L	L	E	H	G	A	N	P	N	L	K	D	I	Y	G	N	T	A	L	H	Y	A	V	Y	S	E	S	T	S	L	A	E	K	L	L	F	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	T	K	M	Y	D	L	L	L	I	K	C	A	K	L	F	P	D	T	N	L	E	A	L	L	N	N	D	G	L	S	P	L	M	M	A	A	K	T	G	K	I	G	I	F	Q	H	I	I	R	R
Template Known Secondary structure																			T	T			G	G	G				T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions