Job Description A0PJZ0 Confidence 99.25% Date Wed May 9 17:33:58 BST 2012 Rank 63 Aligned Residues 150 % Identity 14% Template c2nyjA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1 Resolution 3.20 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20																									.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		R	S	R	R	G	Q	T	V	L	G	S	I	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	T	G	S	G	Y	R	I	R	Y	S	.	E	L	Q	K	I	H	K	A	A	V	K	G	D	A	A	E	M	E	R	C	L	A	R	R	S	G	D	L	D
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.														.
Template Conservation																																																																		.
Template Sequence		D	P	E	T	G	K	T	C	L	L	K	A	X	L	N	L	H	N	G	Q	N	D	T	I	A	L	L	L	D	V	A	R	K	T	D	S	L	K	Q	F	V	N	A	S	Y	T	D	S	Y	Y	K	G	Q	T	A	L	H	I	A	I	E	R	R	N	.	X	T	L	V	T	L	L	V	E	N	G	A	D	V	Q
Template Known Secondary structure			T	T	T													B	T	T	B													T	T	T		S					T		B			S	S	S	S		S		B								T	T		.									T	T	T			T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																												80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	D	K	Q	H	R	T	A	L	H	L	A	C	A	S	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	V	V	T	L	L	V	N	R	K	C	Q	I	D	I	Y	D	K	E	N	R	T	P	L	I	Q	A	V	H	C	Q	E	E	A
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	A	N	G	D	F	F	K	K	T	K	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	L	A	I	V	K	F	L	L	Q	N	S	W	Q	P	A	D	I	S	A	R	D	S	V	G	N	T	V	L	H	A	L	V	E	V	A	D	N	T	V	D	N	T	K	F	V	T	S	X	Y	N	E	I	L	I
Template Known Secondary structure						S	G	G	G	S	S						S								T	T										T		S	S					T	T				T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	V	I	L	L	E	H	G	A	N	P	N	L	K	D	I	Y	G	N	T	A	L	H	Y	A	V	Y	S	E	S	T	S	L	A	E	K	L	L	F	H	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	A	K	L	H	P	T	L	K	L	E	E	I	T	N	R	K	G	L	T	P	L	A	L	A	A	S	S	G	K	I	G	V	L	A	Y	I	L	Q	R	E	I
Template Known Secondary structure						T		T	T			G	G	G				S	S												T												T	T
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions