Job Description A0PJZ0 Confidence 99.45% Date Wed May 9 17:33:58 BST 2012 Rank 61 Aligned Residues 153 % Identity 10% Template c2f37B_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2 Resolution 1.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																									.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		K	L	F	G	F	R	S	R	R	G	Q	T	V	L	G	S	I	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	T	G	S	G	Y	R	I	R	Y	S	.	E	L	Q	K	I	H	K	A	A	V	K	G	D	A	A	E	M	E	R	C	L	A	R	R
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																						.
Template Conservation																																																																															.
Template Sequence		D	S	E	Y	T	E	G	S	T	G	K	T	C	L	X	K	A	V	L	N	L	K	D	G	V	N	A	C	I	L	P	L	L	Q	I	D	R	D	S	G	N	P	Q	P	L	V	N	A	Q	C	T	D	D	Y	Y	R	G	H	S	A	L	H	I	A	I	E	K	R	S	L	Q	C	V	K	L	L	V	.	E	N
Template Known Secondary structure		S	G	G	G	S	B	T	T	T	T	B									T		B	T	T	B		T	T												T		S	S		G	G	G		B			S	T	T	T	T	T		B								T	T										.		T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																																	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	D	L	D	A	L	D	K	Q	H	R	T	A	L	H	L	A	C	A	S	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	V	V	T	L	L	V	N	R	K	C	Q	I	D	I	Y	D	K	E	N	R	T	P	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	N	V	H	A	R	A	C	G	R	F	F	Q	K	G	Q	G	T	C	F	Y	F	G	E	L	P	L	S	L	A	A	C	T	K	Q	W	D	V	V	S	Y	L	L	E	N	P	H	Q	P	A	S	L	Q	A	T	D	S	Q	G	N	T	V	L	H	A	L	V	X	I	S	D	N	S	A	E	N	I	A	L
Template Known Secondary structure		T			T	T					S	G	G	G		T	T	S	S	S	S			S		S	S								T	T												S	S					T	T				T	T	S													S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	A	V	H	C	Q	E	E	A	C	A	V	I	L	L	E	H	G	A	N	P	N	L	K	D	I	Y	G	N	T	A	L	H	Y	A	V	Y	S	E	S	T	S	L	A	E	K	L	L	F	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	S	X	Y	D	G	L	L	Q	A	G	A	R	L	C	P	T	V	Q	L	E	D	I	R	N	L	Q	D	L	T	P	L	K	L	A	A	K	E	G	K	I	E	I	F	R	H	I	L	Q	R
Template Known Secondary structure																	S	T	T			G	G	G				T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions