Job Description A0PJZ0 Confidence 99.74% Date Wed May 9 17:33:58 BST 2012 Rank 22 Aligned Residues 131 % Identity 30% Template c1oy3D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex Resolution 2.05 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	Y	S	E	L	Q	K	I	H	K	A	A	V	K	G	D	A	A	E	M	E	R	C	L	A	R	R	S	G	D	.	.	.	L	D	A	L	D	K	Q	H	R	T	A	L	H	L	A	C	A	S	G	H	V	K	V	V	T	L	L	V	N	R	K	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.						.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.
Template Sequence		V	T	E	D	G	D	T	A	L	H	L	A	V	I	H	Q	H	E	P	F	L	D	F	L	L	.	G	F	S	A	G	H	E	Y	L	D	L	Q	N	D	L	G	Q	T	A	L	H	L	A	A	I	L	G	E	A	S	T	V	E	K	L	Y	A	A	G	A	G	V	L	V	A	E	R	G	G	H	T	A	L	H
Template Known Secondary structure				T	T											T	T										.				T	T	S	G	G	G	G				T	T	S											T											T	T			S	S				T	T	S
Template Predicted Secondary structure																											.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
																																																																			92	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	D	I	Y	D	K	E	N	R	T	P	L	I	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	C	R	V	R	A	H	T	C	A	C	V	L	L	Q	P	R	P	S	H	P	R	D	A	D	E	D	W	R	L	Q	L	E	A	E	N	Y	D	G	H	T	P	L	H	V	A	V	I	H	K	D	A	E	M	V	R	L	L	R	D	A	G	A	D	L	N	K	P	E	P	T	C	G	R	T	P	L	H	L
Template Known Secondary structure				T	T	T	T									S	S	S			S	S								G	G	G	G	T	T				T	T	S										T	T												T			T	T				T	T	T
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	H	C	Q	E	E	A	C	A	V	I	L	L	E	H	G	A	N	P	N	L	K	D	I	Y	G	N	T	A	L	H	Y	A	V	Y	S	E	S	T	S	L	A	E	K	L	L	F	H	G	E	N	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	E	A	Q	A	A	S	V	L	E	L	L	L	K	A	G	A	D	P	T	A	R	M	Y	G	G	R	T	P	L	G	S	A	L	L	R	P	N	P	I	L	A	R	L	L	R	A	H	G	A	P	E	P
Template Known Secondary structure					T	T											T	T			T	T				T	T	S									T	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions