Job Description A0PJZ3 Confidence 99.92% Date Sat Jun 16 10:31:38 BST 2012 Rank 4 Aligned Residues 211 % Identity 16% Template c1zcyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:glycogenin-1; PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser Resolution 1.99 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	V	A	C	G	N	R	L	E	E	T	L	V	M	L	K	S	A	V	L	F	S	H	R	K	I	Q	F	H	I	F	T	E	D	S	L	K	P	E	F	D	K	Q	L	R	Q	W	P	D	S	Y	T	K	K	F	E	H	R	I	Y	P	I	T	F	S	V	G	N	P	Q	E	W	K	K	L	F	K	P	C
Query Conservation
Alig confidence																																																	.	.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		V	T	L	T	T	N	D	A	Y	A	K	G	A	L	V	L	G	S	S	L	K	Q	H	R	T	S	R	R	L	A	V	L	T	T	P	Q	V	S	D	T	M	R	K	A	L	E	I	.	.	.	.	V	F	D	E	V	I	T	V	D	I	L	D	S	G	D	S	A	H	L	T	L	M	K	R	P	E	L	G	V
Template Known Secondary structure						S	S																	T	T		S	S								T	T	S											.	.	.	.			S							T	T	S	T	T	S	T	T								G	G	G
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Q	R	L	F	L	P	V	I	L	K	D	V	D	S	L	L	Y	V	D	T	D	V	L	F	L	R	P	V	D	D	I	W	K	L	L	R	L	F	N	S	T	Q	L	A	A	M	A	P	E	H	E	I	P	K	I	G	W	Y	S	R	F	A	R	H	P	F	Y	G	S	A	G	V	N	S	G	V	M	L
Query Conservation
Alig confidence													.																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	L	T	K	L	H	C	W	S	L	T	.	Q	Y	S	K	C	V	F	M	D	A	D	T	L	V	L	A	N	I	D	D	L	F	E	R	.	.	.	.	.	.	E	E	L	S	A	A	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	W	P	D	C	F	N	S	G	V	F	V
Template Known Secondary structure						G	G	G	G	G		T	.	T		S							T	T					S			G	G	G	G	G	S	.	.	.	.	.	.		S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	T	T	S
Template Predicted Secondary structure													.																									.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.																		.	.	.	.	.	130	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		M	N	L	T	R	I	R	S	T	Q	F	K	N	S	M	I	P	T	G	L	A	W	E	D	M	L	Y	P	L	Y	Q	K	Y	K	N	A	I	T	W	G	D	Q	D	L	L	N	I	I	F	Y	F	.	.	N	P	E	C	L	Y	V	F	P	C	Q	W	N	Y	R	P	D	H	C	M	Y	G	S	N	C	R	E
Query Conservation																																																					.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		Y	Q	P	S	V	E	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	L	L	H	V	A	S	E	Q	G	S	.	F	S	G	G	D	Q	G	L	L	N	T	F	F	N	S	W	A	T	T	D	I	R	K	H	L	P	F	I	Y	N	L	S	S	I	S	I	Y	S	Y	L	P	A	F	K
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T			.	S	S	S	S									T	T	T	T	T	T	S		G	G	G	B			G	G	G	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		138	.	140	.	.	.	.	.																.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	H	E	G	V	S	V	L	H	G	N	R	G	V	Y	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	G	A	N	A	K	V	V	H	F	L	G	Q	T	K	P
Template Known Secondary structure				G	G	G		S						S	S			G
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions