Job Description A0PJZ3 Confidence 14.18% Date Sat Jun 16 10:31:38 BST 2012 Rank 38 Aligned Residues 112 % Identity 13% Template c1xhbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Resolution 2.50 Å

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		112	.	.	.	.	.	.	.	120	.	.		.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure													.					.													.												.	.	.	.	.
Query SS confidence													.					.													.												.	.	.	.	.
Query Sequence		L	A	V	V	A	C	G	N	R	L	E	.	E	T	L	V	.	M	L	K	S	A	V	L	F	S	H	R	K	.	I	Q	F	H	I	F	T	E	D	S	L	.	.	.	.	.	K	P	E	F	D	K	Q	L	R	Q	W	P	D	S	Y	T	K	K	F	E	H	R	I	Y	P	I	T	F	S	V	G	N	P	Q
Query Conservation													.					.													.												.	.	.	.	.
Alig confidence													.					.													.												.	.	.	.	.														.	.	.	.	.	.													.	.	.
Template Conservation																																																													.	.	.	.	.	.													.	.	.
Template Sequence		T	S	V	V	I	V	F	H	N	E	A	W	S	T	L	L	R	T	V	H	S	V	I	N	R	S	P	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	S	Y	V	K	K	L	K	V	.	.	.	.	.	.	P	V	H	V	I	R	M	E	Q	R	S	G	.	.	.
Template Known Secondary structure									S	S																S	S		G	G	G										S				G	G	G	T									S	S	S	S	.	.	.	.	.	.								S	S				.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.													.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		E	W	K	K	L	F	K	P	C	A	A	Q	R	L	F	L	P	V	I	L	K	D	V	D	S	L	L	Y	V	D	T	D	V	L	F	L	R	P	.	V	D	D	I	W	K	L	L	R	L	F	N	S	T	Q	L	A	A	M	A
Query Conservation																																								.
Alig confidence		.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	L	I	R	A	R	L	K	G	A	A	V	S	R	G	Q	V	I	T	F	L	D	A	H	C	E	C	T	A	G	W	L	E	P	L	L	A	R	I	K	H	D	R	R	T	V	V	C	P	I	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.														S	S							S	S					T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions