Job Description P42685 Confidence 99.68% Date Tue Apr 3 14:35:51 BST 2012 Rank 369 Aligned Residues 80 % Identity 25% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.							.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																															.																.	.	.	.	.	.
Query SS confidence																																															.																.	.	.	.	.	.
Query Sequence		A	E	P	W	F	F	G	A	I	G	R	S	D	A	E	K	Q	L	L	Y	S	E	N	K	T	G	S	F	L	I	R	E	S	E	S	Q	K	G	E	F	S	L	S	V	L	.	D	G	A	V	V	K	H	Y	R	I	K	R	L	D	E	.	.	.	.	.	.	G	G	F	F	L	T	R	R	R	I	F	S	T
Query Conservation																																															.																.	.	.	.	.	.
Alig confidence								.												.	.																										.																.	.	.	.	.	.
Template Conservation								.												.	.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	.	.	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D
Template Known Secondary structure				T	T			.												.	.	T	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T				S	S
Template Predicted Secondary structure								.												.	.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		186	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	E	F	V	S	H	Y	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	Q	I	I	V	E	Y	L	Q
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions