Job Description P42685 Confidence 100.00% Date Tue Apr 3 14:35:51 BST 2012 Rank 214 Aligned Residues 267 % Identity 23% Template c3mi9A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb Resolution 2.10 Å

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		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																										.											.	.	.
Query SS confidence																										.											.	.	.
Query Sequence		N	S	I	Q	L	L	K	R	L	G	S	G	Q	F	G	E	V	W	E	G	L	W	N	N	.	T	T	P	V	A	V	K	T	L	K	.	.	.	P	G	S	M	D	P	N	D	F	L	R	E	A	Q	I	M	K	N	L	R	H	P	K	L	I	Q	L	Y	A	V	C	T	L	E	D	P	I	Y	I	I	T	E
Query Conservation																										.											.	.	.
Alig confidence																										.											.	.	.
Template Conservation
Template Sequence		S	K	Y	E	K	L	A	K	I	G	Q	G	T	F	G	E	V	F	K	A	R	H	R	K	T	G	Q	K	V	A	L	K	K	V	L	M	E	N	E	K	E	G	F	P	I	T	A	L	R	E	I	K	I	L	Q	L	L	K	H	E	N	V	V	N	L	I	E	I	C	R	T	K	G	S	I	Y	L	V	F	D
Template Known Secondary structure		G	G								S	S		S	T	T	S							T	T	T												S	S		S	S	S	S																	T	T	B
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	R	H	G	S	L	Q	E	Y	L	Q	N	D	T	G	S	K	I	H	L	T	Q	Q	V	D	M	A	A	Q	V	A	S	G	M	A	Y	L	E	S	R	N	Y	I	H	R	D	L	A	A	R	N	V	L	V	G	E	H	N	I	Y	K	V	A	D	F	G	L	A	R	V	F	K	V	D	N	E	D	I	Y
Query Conservation
Alig confidence																.	.																																																													.
Template Conservation																.	.																																																													.
Template Sequence		F	C	E	H	D	L	A	G	L	L	S	N	V	L	.	.	V	K	F	T	L	S	E	I	K	R	V	M	Q	M	L	L	N	G	L	Y	Y	I	H	R	N	K	I	L	H	R	D	M	K	A	A	N	V	L	I	T	R	D	G	V	L	K	L	A	D	F	G	L	A	R	A	F	S	L	A	K	.	N	S	Q
Template Known Secondary structure				S										T	T	.	.	S																								T	T							S	G	G	G					T	T	S								T	T								S	.	S	S	S
Template Predicted Secondary structure																.	.																																																													.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.																																																		.	.	.	.	.	.	.	.
Query SS confidence																								.																																																		.	.	.	.	.	.	.	.
Query Sequence		E	S	R	H	E	I	K	L	P	V	K	W	T	A	P	E	A	I	R	S	N	K	.	F	S	I	K	S	D	V	W	S	F	G	I	L	L	Y	E	I	I	T	Y	G	K	M	P	Y	S	G	M	T	G	A	Q	V	I	Q	M	L	A	Q	N	Y	R	L	P	Q	P	S	N	C	.	.	.	.	.	.	.	.
Query Conservation																								.																																																		.	.	.	.	.	.	.	.
Alig confidence																								.																				.																														.	.	.	.	.	.	.	.
Template Conservation																																												.
Template Sequence		P	N	R	Y	N	R	V	V	T	L	W	Y	R	P	P	E	L	L	L	G	E	R	D	Y	G	P	P	I	D	L	W	G	A	G	C	I	M	A	E	M	W	T	.	R	S	P	I	M	Q	G	N	T	E	Q	H	Q	L	A	L	I	S	Q	L	C	G	S	I	T	P	E	V	W	P	N	V	D	N	Y	E	L
Template Known Secondary structure									S		G	G	G							T	T			S			T																	.	S	S		S				S	S																	T	T	T	S	T	T	G	G	G		G	G
Template Predicted Secondary structure																																												.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
																									459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	Q	F	Y	N	I	M	L	E	C	W	N	A	E	P	K	E	R	P	T	F	E	T	L	R	W	K	L	E	D	Y	F	E	T	D	S	S	Y	S	D	A	N	N	F	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																																																					.	.
Template Sequence		Y	E	K	L	E	L	V	K	G	Q	K	R	K	V	K	D	R	L	K	A	Y	V	R	D	P	Y	A	L	D	L	I	D	K	L	L	V	L	D	P	A	Q	R	I	D	S	D	D	A	L	N	H	.	.	D	F	F	W	S	D	P	M	P	S	D	L	K	G	M	L
Template Known Secondary structure		G	T	S	S				S	S																										S		S	S	G	G	G	S								T	S	.	.	G	G	G	G	S	S	S					S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions