Return to main results Retrieve Phyre Job Id

Job DescriptionP42685
Confidence99.56%DateTue Apr 3 14:35:51 BST 2012
Rank432Aligned Residues75
% Identity32%Templatec2epdA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:rho gtpase-activating protein 4; PDBTitle: solution structure of sh3 domain in rho-gtpase-activating2 protein 4
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50.........60.........70.........80.........90.........100.........110.....
Predicted Secondary structure 

























































Query SS confidence 















































































Query Sequence  CSPQSQRHGHYFVALFDYQARTAEDLSFRAGDKLQVLDTLHEGWWFARHLEKRRDGSSQQLQGYIPSNYVAEDRSLQAEP
Query Conservation              

          



  

   

      

              
  
 

 


     
    
Alig confidence 
















































.........





















Template Conservation   


         

 

 
    


   



 
       
     ......... 
  
 

  

          
Template Sequence  SSGSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH. . . . . . . . . NGMRGLIPHKYITLPAGTEKQV
Template Known Secondary structure 



SSS

SS

SSTTB

TT
TT.........TTSSS

SS
S


Template Predicted Secondary structure 






















.........











Template SS confidence 















































































   740.........750.........760.........770.........780........ .790.........800.........810
 
   116...
Predicted Secondary structure 



Query SS confidence 



Query Sequence  WFFG
Query Conservation 
 

Alig confidence 



Template Conservation     
Template Sequence  VGAG
Template Known Secondary structure 



Template Predicted Secondary structure 



Template SS confidence 



   811...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions