 |
| Job Description | P41271 | | Confidence | 89.41% | Date | Sat Jun 16 10:47:59 BST 2012 |
| Rank | 23 | Aligned Residues | 73 |
| % Identity | 21% | Template | c2c7wB_ |
| PDB info |
PDB header:growth factor | Chain: B: PDB Molecule:vascular endothelial growth factor b precursor; |
PDBTitle: crystal structure of human vascular endothelial growth2 factor-b: identification of amino acids important for3 angiogeninc activity
|
| Resolution | 2.48 Å |
|
 |
|   |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
K | S | A | W | C | E | A | K | N | I | T | Q | I | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | H | S | G | C | E | A | K | S | I | Q | N | R | A | C | L | G | Q | C | F | S | Y | S | V | P | N | T | F | P | Q | S | T | E | S | L | V | H | C | D | S | C | M | P | A | Q | S | M | W | E | I | V | T | L | E | C |
| Query Conservation |   |
|   |   |
|
|   |   |   |
|
|   |
|
|
| . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|   |
|   |   |
|   |
|   |   |
|   |
|   |
|   |
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |
|
|
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|   |
|   |
|
|   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |
| . | . | . | . |
|   |
|   |
|
|
|
|
|
|   | . | . | . | . | . | . | . | . |   |   |   |   |   | . | . | . | . | . | . | . |
|   |
|
|   |
|   |   |
|   |   |   |
|   |   |
| Template Sequence |   |
T | R | A | T | C | Q | P | R | E | V | V | V | P | L | T | V | E | L | M | G | T | V | A | K | Q | L | V | P | S | C | . |
. |
. |
. |
V | T | V | Q | R | C | G | G | C | C | P | . |
. |
. |
. |
. |
. |
. |
. |
D | D | G | L | E | . |
. |
. |
. |
. |
. |
. |
C | V | P | T | G | Q | H | Q | V | R | M | Q | I | L | M |
| Template Known Secondary structure |   |
 |  |  | B | S |  |  |  |  |  |  |  |  | T | T | T | S | S | S | S |
|
|
|
|
|  |  | S | S |  | . | . | . | . |  |  |  |  |  |  |  | S | B |
| S | . | . | . | . | . | . | . | . | S | S | S |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|  |  |  |  |
|
|  | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
|
. | . | . | . | . | . | . | . | 60 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | |
|
|
|
|
|
|
. | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
|   |
|   |   |
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
P | G | H | E | E | V | P | R | V | D | K | L | V | E | K | I | L | H | C | S | C | Q | A |
| Query Conservation |   |
|
|   |   |   |
|   |   |
|   |
|   |
|
|   |
|   |
|
|   |
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |
|   |   |
| Template Sequence |   |
I | R | Y | P | S | S | Q | L | G | E | M | S | L | E | E | H | S | Q | C | E | C | R | P |
| Template Known Secondary structure |   |
 |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|