 |
| Job Description | P41271 | | Confidence | 88.62% | Date | Sat Jun 16 10:47:59 BST 2012 |
| Rank | 25 | Aligned Residues | 77 |
| % Identity | 18% | Template | d1fzva_ |
| SCOP info | Cystine-knot cytokines
| Cystine-knot cytokines
| Platelet-derived growth factor-like
|
| Resolution | 2.00 |
|
 |
|   |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
. |
| Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| Query Sequence |   |
K | S | A | W | C | E | A | K | N | I | T | Q | I | V | . |
. |
. |
. |
. |
. |
. |
G | H | S | G | C | E | A | K | S | I | Q | N | R | A | C | L | G | Q | C | F | S | Y | S | V | P | N | T | F | P | Q | S | T | E | S | L | V | H | C | D | S | C | M | P | A | Q | S | M | W | E | I | V | T | L | E | C | P | G | . |
H |
| Query Conservation |   |
|   |   |
|
|   |   |   |
|
|   |
|
|
| . | . | . | . | . | . | . |   |   |   |
|
|   |
|   |   |
|   |
|   |   |
|   |
|   |
|   |
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |
|
|
|   |
|
|
| . |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| Template Conservation |   |
  |   |
|   |
|   |
|
|   |   |   |
|   |
|   |   |
|   |
|   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |
|
|
|
|
|
|   | . | . | . | . | . | . | . | . |   |   |   |   |   | . | . | . | . | . | . | . |
|   |
|
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
| Template Sequence |   |
G | R | S | Y | C | R | A | L | E | R | L | V | D | V | V | S | E | Y | P | S | E | V | E | H | M | F | S | P | S | C | V | S | L | L | R | C | T | G | C | C | G | . |
. |
. |
. |
. |
. |
. |
. |
D | E | N | L | H | . |
. |
. |
. |
. |
. |
. |
C | V | P | V | E | T | A | N | V | T | M | Q | L | L | K | I | R | S | G |
| Template Known Secondary structure |   |
 |  |  | B | S |  |  |  |  |  |  |  |  | T | G | G | G | S | S | S |
|
|
| S |
|  |  | S | S |  |  |  |  |  |  |  |  |
| B |
| S | . | . | . | . | . | . | . | . | S | T | T |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T |
| Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
31 | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
|   |
|   |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
| Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
E | E | V | P | R | V | D | K | L | V | E | K | I | L | H | C | S | C | Q | A |
| Query Conservation |   |
  |   |
|   |   |
|   |
|   |
|
|   |
|   |
|
|   |
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |
|
|
|
| Template Sequence |   |
D | R | P | S | Y | V | E | L | T | F | S | Q | H | V | R | C | E | C | R | P |
| Template Known Secondary structure |   |
S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
96 | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|