Email l.a.kelley@imperial.ac.uk Description O95081 Date Wed May 9 18:00:30 BST 2012 Unique Job ID dd03a86d26de46f9

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2d9lA_ 100.0 68 PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip 2 c3lvrE_ 100.0 19 PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium 3 c2iqjB_ 100.0 22 PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like 4 d1dcqa2 100.0 20 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:Pyk2-associated protein beta ARF-GAP domain 5 c3fehA_ 100.0 22 PDB header:hydrolase activator Chain: A: PDB Molecule:centaurin-alpha-1; PDBTitle: crystal structure of full length centaurin alpha-1 6 c3jueA_ 100.0 22 PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1 7 c1dcqA_ 100.0 20 PDB header:metal binding protein Chain: A: PDB Molecule:pyk2-associated protein beta; PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta. 8 c2b0oF_ 100.0 18 PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain 9 c2owaB_ 100.0 21 PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040) 10 c2p57A_ 100.0 19 PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein 11 c3o47A_ 100.0 24 PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein 12 c3dwdB_ 100.0 24 PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1 13 d1u5ka2 96.4 16 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:RecO C-terminal domain-like 14 c1u5kA_ 95.7 16 PDB header:recombination,replication Chain: A: PDB Molecule:hypothetical protein; PDBTitle: recombinational repair protein reco 15 c3bjiA_ 93.9 14 PDB header:signaling protein Chain: A: PDB Molecule:proto-oncogene vav; PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1 16 c1kxuA_ 82.7 19 PDB header:regulatory protein Chain: A: PDB Molecule:cyclin h; PDBTitle: cyclin h, a positive regulatory subunit of cdk activating kinase 17 c3ihpB_ 81.1 18 PDB header:hydrolase Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: covalent ubiquitin-usp5 complex 18 d2ba0d2 80.4 14 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 19 d1cjya2 78.4 29 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Lysophospholipase 20 d2br2b2 77.8 18 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 21 d2g45a1 not modelled 77.5 20 Fold:RING/U-box Superfamily:RING/U-box Family:Zf-UBP 22 c2dvkA_ not modelled 76.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0130 protein ape0816; PDBTitle: crystal structure of hypothetical protein from aeropyrum pernix 23 d1y0ja1 not modelled 76.1 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 24 c2qg3B_ not modelled 75.5 13 PDB header:unknown function Chain: B: PDB Molecule:upf0130 protein af_2059; PDBTitle: crystal structure of a tyw3 methyltransferase-like protein (af_2059)2 from archaeoglobus fulgidus dsm 4304 at 1.95 a resolution 25 d2je6b2 not modelled 74.9 20 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 26 d2djaa1 not modelled 74.7 20 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 27 c3c5kA_ not modelled 74.5 13 PDB header:hydrolase Chain: A: PDB Molecule:histone deacetylase 6; PDBTitle: crystal structure of human hdac6 zinc finger domain 28 c2junA_ not modelled 70.9 27 PDB header:ligase Chain: A: PDB Molecule:midline-1; PDBTitle: structure of the mid1 tandem b-boxes reveals an interaction2 reminiscent of intermolecular ring heterodimers 29 d2dq5a1 not modelled 70.8 27 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 30 c2egmA_ not modelled 70.7 19 PDB header:transcription/metal binding protein Chain: A: PDB Molecule:tripartite motif-containing protein 41; PDBTitle: solution structure of the zf-b_box domain from human2 tripartite motif protein 41 31 c2d8uA_ not modelled 70.1 19 PDB header:ligase Chain: A: PDB Molecule:ubiquitin ligase trim63; PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein 32 d1jkwa1 not modelled 67.0 19 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 33 d5gata_ not modelled 64.3 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 34 c2yrgA_ not modelled 64.1 25 PDB header:ligase Chain: A: PDB Molecule:tripartite motif-containing protein 5; PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5 35 d1gnfa_ not modelled 59.1 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 36 c2it3B_ not modelled 58.2 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0130 protein ph1069; PDBTitle: structure of ph1069 protein from pyrococcus horikoshii 37 c2vrwB_ not modelled 57.1 15 PDB header:signaling protein Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor 38 c2gb5B_ not modelled 56.1 21 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 39 d2nn6b2 not modelled 55.8 6 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 40 d2a1ja1 not modelled 54.9 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 41 c3mhsA_ not modelled 54.4 15 PDB header:hydrolase/transcription regulator/protei Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 8; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 42 c1y1yS_ not modelled 54.4 20 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 43 c2i6yA_ not modelled 53.2 5 PDB header:lyase Chain: A: PDB Molecule:anthranilate synthase component i, putative; PDBTitle: structure and mechanism of mycobacterium tuberculosis salicylate2 synthase, mbti 44 c2kgoA_ not modelled 52.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402 45 d2crga1 not modelled 52.6 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 46 c2zetD_ not modelled 52.2 19 PDB header:signaling protein Chain: D: PDB Molecule:melanophilin; PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin 47 d2dida1 not modelled 51.8 19 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 48 d2uzga1 not modelled 51.4 15 Fold:RING/U-box Superfamily:RING/U-box Family:Zf-UBP 49 d2d8ua1 not modelled 51.2 18 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 50 c2riqA_ not modelled 50.9 19 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 51 d3gata_ not modelled 50.8 15 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 52 c1nltA_ not modelled 50.4 26 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 53 d2idaa1 not modelled 49.9 17 Fold:RING/U-box Superfamily:RING/U-box Family:Zf-UBP 54 c3ky9B_ not modelled 49.8 13 PDB header:apoptosis Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: autoinhibited vav1 55 d2a2pa1 not modelled 49.8 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 56 d1hkya_ not modelled 49.7 54 Fold:Hairpin loop containing domain-like Superfamily:Hairpin loop containing domain-like Family:Pan module (APPLE domain) 57 d2vuti1 not modelled 49.7 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 58 c1d4uA_ not modelled 49.2 25 PDB header:dna binding protein Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd); PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies 59 d1pjua1 not modelled 49.1 31 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 60 c2kdxA_ not modelled 47.5 20 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 61 d2dipa1 not modelled 47.3 18 Fold:RING/U-box Superfamily:RING/U-box Family:ZZ domain 62 c1x68A_ not modelled 47.1 20 PDB header:protein binding Chain: A: PDB Molecule:fhl5 protein; PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein 63 d2g5fa1 not modelled 46.6 5 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 64 c1x79C_ not modelled 46.4 28 PDB header:protein transport Chain: C: PDB Molecule:rab gtpase binding effector protein 1; PDBTitle: crystal structure of human gga1 gat domain complexed with2 the gat-binding domain of rabaptin5 65 d1cvra2 not modelled 46.2 14 Fold:Caspase-like Superfamily:Caspase-like Family:Gingipain R (RgpB), N-terminal domain 66 c2eqrA_ not modelled 46.1 17 PDB header:transcription Chain: A: PDB Molecule:nuclear receptor corepressor 1; PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1 67 d2bkra1 not modelled 46.1 8 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Adenain-like 68 d1y0pa1 not modelled 45.8 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 69 c1pqvS_ not modelled 43.2 30 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 70 c2jvnA_ not modelled 42.2 19 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 71 d1zbdb_ not modelled 41.9 17 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 72 d1k0ga_ not modelled 40.6 25 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 73 d1v6za2 not modelled 40.5 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 74 c2j83B_ not modelled 40.1 20 PDB header:hydrolase Chain: B: PDB Molecule:ulilysin; PDBTitle: ulilysin metalloprotease in complex with batimastat. 75 c2yusA_ not modelled 39.8 16 PDB header:transcription Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the sant domain of human swi/snf-2 related matrix-associated actin-dependent regulator of3 chromatin subfamily c member 1 76 d1ffya1 not modelled 39.0 12 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 77 d1qdla_ not modelled 38.8 5 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 78 d2nn6d2 not modelled 38.8 20 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 79 d1cota_ not modelled 38.5 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 80 d2nllb_ not modelled 38.1 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 81 c3r07A_ not modelled 37.3 17 PDB header:transferase Chain: A: PDB Molecule:lipoate-protein ligase a subunit 1; PDBTitle: structural analysis of an archaeal lipoylation system. a bi-partite2 lipoate protein ligase and its e2 lipoyl domain from thermoplasma3 acidophilum 82 d1fyba1 not modelled 36.8 39 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 83 c2hyxA_ not modelled 36.7 16 PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis 84 d1tlja_ not modelled 36.3 14 Fold:SSo0622-like Superfamily:SSo0622-like Family:SSo0622-like 85 c1tljA_ not modelled 36.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0130 protein sso0622; PDBTitle: crystal structure of conserved protein of unknown function2 sso0622 from sulfolobus solfataricus 86 c2cszA_ not modelled 36.0 29 PDB header:signaling protein Chain: A: PDB Molecule:synaptotagmin-like protein 4; PDBTitle: solution structure of the ring domain of the synaptotagmin-2 like protein 4 87 d2fn0a1 not modelled 35.2 5 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 88 d1wkqa_ not modelled 34.9 13 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 89 c2eblA_ not modelled 34.8 23 PDB header:transcription Chain: A: PDB Molecule:coup transcription factor 1; PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1 90 d1pfta_ not modelled 34.1 32 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 91 c1x64A_ not modelled 33.7 19 PDB header:contractile protein Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein; PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein 92 d2cora1 not modelled 33.6 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 93 d2csva1 not modelled 33.3 18 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 94 d1lc5a_ not modelled 33.1 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 95 c3h9mA_ not modelled 32.9 12 PDB header:lyase Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i; PDBTitle: crystal structure of para-aminobenzoate synthetase,2 component i from cytophaga hutchinsonii 96 c2difA_ not modelled 32.1 17 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 39; PDBTitle: one sequence two fold ? : miss fold of the zf-b-box domain2 from human tripartite motif protein 39 97 d1qypa_ not modelled 32.1 20 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 98 c1xt5A_ not modelled 32.0 16 PDB header:immune system Chain: A: PDB Molecule:variable region-containing chitin-binding PDBTitle: crystal structure of vcbp3, domain 1, from branchiostoma2 floridae 99 d1dl6a_ not modelled 31.6 21 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 100 c3tsuA_ not modelled 31.5 26 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 101 d1unld_ not modelled 30.9 38 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 102 c1l4aE_ not modelled 30.8 20 PDB header:endocytosis/exocytosis Chain: E: PDB Molecule:synaphin a; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 103 c1unhD_ not modelled 30.3 38 PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin. 104 d1tiha_ not modelled 30.1 39 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 105 d1ynwa1 not modelled 29.8 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 106 c3pkiF_ not modelled 29.7 40 PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose 107 c3jyvN_ not modelled 29.6 22 PDB header:ribosome Chain: N: PDB Molecule:40s ribosomal protein s29(a); PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution 108 d2fc7a1 not modelled 29.6 26 Fold:RING/U-box Superfamily:RING/U-box Family:ZZ domain 109 c2darA_ not modelled 29.6 25 PDB header:metal binding protein Chain: A: PDB Molecule:pdz and lim domain protein 5; PDBTitle: solution structure of first lim domain of enigma-like pdz2 and lim domains protein 110 c1cvrA_ not modelled 29.5 13 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:gingipain r; PDBTitle: crystal structure of the arg specific cysteine proteinase gingipain r2 (rgpb) 111 d1hcqa_ not modelled 29.3 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 112 c1oahA_ not modelled 29.2 19 PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). 113 d1oaha_ not modelled 29.2 19 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 114 c2gamA_ not modelled 28.6 16 PDB header:transferase Chain: A: PDB Molecule:beta-1,6-n-acetylglucosaminyltransferase; PDBTitle: x-ray crystal structure of murine leukocyte-type core 2 b1,2 6-n-acetylglucosaminyltransferase (c2gnt-l) in complex3 with galb1,3galnac 115 d1ce3a_ not modelled 28.3 35 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 116 d1i7qa_ not modelled 27.8 19 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 117 c1qh2B_ not modelled 27.5 36 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:protein (trypsin inhibitor c2); PDBTitle: chymotrypsin inhibitor (c2) from nicotiana alata 118 c2d8xA_ not modelled 27.4 25 PDB header:structural protein, cell cycle Chain: A: PDB Molecule:protein pinch; PDBTitle: solution structure of the second lim domain of particularly2 interesting new cys-his protein (pinch) 119 d2o9ca1 not modelled 27.4 13 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 120 c3bvoA_ not modelled 27.3 50 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb