Job Description O95081 Confidence 54.36% Date Wed May 9 18:00:30 BST 2012 Rank 42 Aligned Residues 59 % Identity 20% Template c1y1yS_ PDB info PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex Resolution 4.00 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.									.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																															.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		G	G	K	A	E	A	E	A	A	S	E	V	W	C	R	R	V	R	E	L	G	G	C	S	Q	A	G	N	R	.	.	.	.	H	C	F	E	C	A	Q	R	G	V	T	Y	V	D	I	T	V	G	S	.	.	.	.	.	.	.	.	F	V	C	T	T	C	S	G	L	L	R	G	L	N	P	P	H	R	V	K
Query Conservation																															.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.																				.	.	.	.	.	.	.	.							.	.	.	.	.	.	.		.	.
Template Conservation																																																																				.	.	.	.	.	.	.		.	.
Template Sequence		A	P	A	P	L	K	Q	K	I	E	E	I	A	K	Q	N	L	Y	N	A	Q	G	A	T	I	E	R	S	V	T	D	R	F	T	C	G	K	C	K	E	K	K	V	S	Y	Y	Q	L	Q	T	R	S	A	D	E	P	L	T	T	F	C	T	C	E	A	C	.	.	.	.	.	.	.	G	.	.	N	R	W	K
Template Known Secondary structure		S	S	S	S																T	S										T	T				S	S	S			S										S		T	T	S									S	S	S	.	.	.	.	.	.	.		.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.		.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.								.			.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions