Phyre 2 alignment of O95081 with c2kaeA_

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Job Description | O95081
Confidence | 23.68% | Date | Wed May 9 18:00:30 BST 2012
Rank | 148 | Aligned Residues | 35
% Identity | 20% | Template | c2kaeA_
PDB info | PDB header:transcription/dna | Chain: A: PDB Molecule:gata-type transcription factor; | PDBTitle: data-driven model of med1:dna complex
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 46 | . | . | . | 50 | . | . |  | . | . | . | . | . | . | . | 60 | . | . | . | . |  | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80
Predicted Secondary structure |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | H | C | F | E | C | A | Q | . | R | G | V | T | Y | V | D | I | T | V | G | S | . | F | V | C | T | T | C | S | G | L | L | R | G | L | N | P | P
Query Conservation |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | C | S | N | C | S | V | T | E | T | I | R | W | R | N | I | R | S | K | E | G | I | Q | C | N | A | C | F | I | Y | Q | R | K | Y | N | K | T
Template Known Secondary structure |  |  |  | S | S | S |  |  | S |  |  | S | S |  |  |  |  | S | S | S | S |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 113 | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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