20/05/2012 22:30:31 : INFO  : Run start: Sun May 20 22:30:31 BST 2012
20/05/2012 22:30:31 : INFO  : Initialised job
20/05/2012 22:30:31 : INFO  : Initialised job:
Sequence
>batch____
MVMAAKKGPGPGGGVSGGKAEAEAASEVWCRRVRELGGCSQAGNRHCFECAQRGVTYVDI
TVGSFVCTTCSGLLRGLNPPHRVKSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTS
LVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLG
DPAPSLSVAASTSSQPVSQSHARTSQARSTQPPPHSSVKKASTDLLADIGGDPFAAPQMA
PAFAAFPAFGGQTPSQGGFANFDAFSSGPSSSVFGSLPPAGQASFQAQPTPAGSSQGTPF
GATPLAPASQPNSLADVGSFLGPGVPAAGVPSSLFGMAGQVPPLQSVTMGGGGGSSTGLA
FGAFTNPFTAPAAQSPLPSTNPFQPNGLAPGPGFGMSSAGPGFPQAVPPTGAFASSFPAP
LFPPQTPLVQQQNGSSFGDLGSAKLGQRPLSQPAGISTNPFMTGPSSSPFASKPPTTNPF
L

20/05/2012 22:30:31 : INFO  : Checked sequence
20/05/2012 22:30:31 : INFO  : Finding homologues with PSI-BLAST
20/05/2012 22:30:31 : INFO  : PSI-BLAST 3 iterations
20/05/2012 22:33:57 : INFO  : PSI-BLAST 5 iterations
20/05/2012 22:43:33 : INFO  : Finished PSI-BLAST
20/05/2012 22:43:33 : INFO  : Running Buildali to generate a3m file
20/05/2012 23:20:59 : INFO  : Converting to HMM
20/05/2012 23:21:04 : INFO  : Calibrating HMM
20/05/2012 23:21:16 : INFO  : Searching HMM database
20/05/2012 23:30:58 : INFO  : Finished buildali
20/05/2012 23:30:58 : INFO  : Predicting secondary structure
20/05/2012 23:30:59 : INFO  : Predicted secondary structure (PSI-Pred)
20/05/2012 23:30:59 : INFO  : Predicting Disordered regions
20/05/2012 23:30:59 : INFO  : Predicted Disorder (Disopred)
20/05/2012 23:30:59 : INFO  : Running memsat_svm check
20/05/2012 23:33:24 : INFO  : Running memsat_svm full
20/05/2012 23:34:30 : INFO  : Predicted Transmembrane (memsat_svm) ID 'dd03a86d26de46f9'
20/05/2012 23:34:30 : INFO  : Initialising fold library search
20/05/2012 23:34:30 : INFO  : Initialised search input
20/05/2012 23:34:30 : INFO  : Building Ensemble models
20/05/2012 23:34:30 : INFO  : Building hh.c2d9lA_.model.1.pdb
20/05/2012 23:34:30 : INFO  : Building c2d9lA_.1.pdb
20/05/2012 23:34:30 : INFO  : Building c3lvrE_.2.pdb
20/05/2012 23:34:31 : INFO  : Building c2iqjB_.3.pdb
20/05/2012 23:34:31 : INFO  : Building d1dcqa2.4.pdb
20/05/2012 23:34:31 : INFO  : Building c3fehA_.5.pdb
20/05/2012 23:34:32 : INFO  : Building c3jueA_.6.pdb
20/05/2012 23:34:32 : INFO  : Building c1dcqA_.7.pdb
20/05/2012 23:34:33 : INFO  : Building c2b0oF_.8.pdb
20/05/2012 23:34:33 : INFO  : Building c2owaB_.9.pdb
20/05/2012 23:34:33 : INFO  : Building c2p57A_.10.pdb
20/05/2012 23:34:34 : INFO  : Building c3o47A_.11.pdb
20/05/2012 23:34:34 : INFO  : Building c3dwdB_.12.pdb
20/05/2012 23:34:34 : INFO  : Building d1u5ka2.13.pdb
20/05/2012 23:34:35 : INFO  : Building c1u5kA_.14.pdb
20/05/2012 23:34:35 : INFO  : Building c3bjiA_.15.pdb
20/05/2012 23:34:35 : INFO  : Building c1kxuA_.16.pdb
20/05/2012 23:34:36 : INFO  : Building c3ihpB_.17.pdb
20/05/2012 23:34:36 : INFO  : Building d2ba0d2.18.pdb
20/05/2012 23:34:37 : INFO  : Building d1cjya2.19.pdb
20/05/2012 23:34:37 : INFO  : Building d2br2b2.20.pdb
20/05/2012 23:34:39 : INFO  : Finished HH model building
20/05/2012 23:34:39 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
20/05/2012 23:34:42 : INFO  : html domain output complete ID 'dd03a86d26de46f9'
20/05/2012 23:45:20 : INFO  : Run end  : Sun May 20 23:45:20 BST 2012
