 |
| Job Description | Q13882 | | Confidence | 99.90% | Date | Wed May 9 17:41:40 BST 2012 |
| Rank | 336 | Aligned Residues | 101 |
| % Identity | 28% | Template | c2lctA_ |
| PDB info |
PDB header:signaling protein | Chain: A: PDB Molecule:proto-oncogene vav; |
PDBTitle: solution structure of the vav1 sh2 domain complexed with a syk-derived2 doubly phosphorylated peptide
|
| Resolution | UNK |
|
 |
|   |   |
69 | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
E | R | E | T | V | E | S | E | P | W | F | F | G | C | I | S | R | S | E | A | V | R | R | L | Q | A | E | G | N | A | T | G | A | F | L | I | R | V | S | E | K | P | S | A | D | Y | V | L | S | V | R | D | T | Q | A | V | R | H | Y | K | I | W | R | R | A | G | G | R | L | H | L | N | E | A | V | S | F | L | S | L |
| Query Conservation |   |
  |   |   |   |
|   |   |   |   |
|   |   |
|   |
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |
|   |   |   |   |
|
|   |
|   |
|
|
|   |   |
|
|   |
|
|   |   |   | . | . |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|   |   |
| . |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|
| Template Sequence |   |
H | M | Q | D | L | S | V | H | L | W | Y | A | G | P | M | E | R | A | G | A | E | S | I | L | A | N | R | . |
. |
S | D | G | T | F | L | V | R | Q | R | V | K | D | A | A | E | F | A | I | S | I | K | Y | N | V | E | V | K | H | I | K | I | . |
M | T | A | E | G | L | Y | R | I | T | E | K | K | A | F | R | G | L |
| Template Known Secondary structure |   |
| S | S |
| S | T | T | S | S | S |  |  |  | S |
|
|  |  |  |  |  |  |  |  |  |  | S | . | . |
| T | T | B |  |  |  |  |  |
|
| S | S | S |
| S |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |
| . |  |  |  | T | T |  |  |  | S | S | S | S | S |  |  | S | S |  |
| Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
662 | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | |
|
. | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | |
. | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . |
|   |
|   |   |
149 | 150 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
P | E | L | V | N | Y | H | R | A | Q | S | . |
. |
. |
. |
. |
L | S | H | G | L | R | L | A | A | P | C | R | K |
| Query Conservation |   |
  |   |
|
|   |   |
|   |   |   |   | . | . | . | . | . |   |   |
|   |   |   |
|   |   |
|   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
| Template Sequence |   |
T | E | L | V | E | F | Y | Q | Q | N | S | L | K | D | C | F | K | S | L | D | T | T | L | Q | F | P | F | K | E |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | S |
|  |  |  |  | S | S | S |
|
|
|
|
|
| B |
| S |
|
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
739 | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|