Job Description A0M8Q6 Confidence 99.84% Date Thu Apr 26 09:16:38 BST 2012 Rank 128 Aligned Residues 96 % Identity 21% Template c3rolD_ PDB info PDB header:immune system Chain: D: PDB Molecule:beta-2-microglobulin; PDBTitle: murine class i major histocompatibility complex h-2kb in complex with2 post-translationally modified lcmv-derived gp34-41 peptide,3 comprising a nitrotyrosine at position 3 Resolution 2.60 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S	H	R
Query Conservation
Alig confidence															.																																			.																									.	.	.
Template Conservation															.																																			.																									.	.	.
Template Sequence		Q	K	T	P	Q	I	Q	V	Y	S	R	H	P	.	P	E	N	G	K	P	N	I	L	N	C	Y	V	T	Q	F	H	P	P	H	I	E	I	Q	M	L	K	N	G	K	K	I	P	K	.	V	E	M	S	D	M	S	F	S	K	D	W	S	F	Y	I	L	A	H	T	E	F	T	P	.	.	.	T	E	T	D
Template Known Secondary structure			B									S	S		.			T	T													B	S	S									T	T				S	S	.										T	T														.	.	.		S	S
Template Predicted Secondary structure															.																																			.																									.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Y	A	C	R	V	K	H	D	S	M	A	E	P	K	T	V	Y	W	D	R
Template Known Secondary structure										T	T		S	S								T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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