Job Description A0M8Q6 Confidence 99.82% Date Thu Apr 26 09:16:38 BST 2012 Rank 477 Aligned Residues 95 % Identity 31% Template c3lqzB_ PDB info PDB header:immune system Chain: B: PDB Molecule:hla-dp2 beta chain linked with dra peptide; PDBTitle: crystal structure of hla-dp2 Resolution 3.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S
Query Conservation
Alig confidence																	.	.	.	.	.																																																									.	.	.
Template Conservation																	.	.	.	.	.																																																									.	.	.
Template Sequence		Q	R	R	V	Q	P	R	V	N	V	S	P	S	K	K	.	.	.	.	.	G	H	N	L	L	V	C	H	V	T	D	F	Y	P	G	S	I	Q	V	R	W	F	L	N	G	Q	E	E	T	A	G	V	V	S	T	N	L	I	R	N	G	D	W	T	F	Q	I	L	V	M	L	E	M	T	P	Q	.	.	.	Q
Template Known Secondary structure		T			B			B									.	.	.	.	.													B	S	S									T	T					T	T										S	S	S														.	.	.	S
Template Predicted Secondary structure																	.	.	.	.	.																																																									.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	V	Y	T	C	Q	V	E	H	T	S	L	D	S	P	V	T	V	E	W	K	A
Template Known Secondary structure		S										S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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