Job Description A0M8Q6 Confidence 99.87% Date Thu Apr 26 09:16:38 BST 2012 Rank 33 Aligned Residues 99 % Identity 25% Template c3lqzA_ PDB info PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dp alpha 1 chain; PDBTitle: crystal structure of hla-dp2 Resolution 3.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S
Query Conservation
Alig confidence																	.																																																														.	.	.
Template Conservation																	.																																																														.	.	.
Template Sequence		A	T	N	D	P	P	E	V	T	V	F	P	K	E	P	.	V	E	L	G	Q	P	N	T	L	I	C	H	I	D	K	F	F	P	P	V	L	N	V	T	W	L	C	N	G	E	L	V	T	E	G	V	A	E	S	L	F	L	P	R	T	D	Y	S	F	H	K	F	H	Y	L	T	F	V	P	S	A	.	.	.
Template Known Secondary structure					B									S	S		.			T	T													B	S										T	T					T	T										T	T	S														S	.	.	.
Template Predicted Secondary structure																	.																																																														.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	F	Y	D	C	R	V	E	H	W	G	L	D	Q	P	L	L	K	H	W	E	A
Template Known Secondary structure		S										T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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