Job Description A0M8Q6 Confidence 99.87% Date Thu Apr 26 09:16:38 BST 2012 Rank 39 Aligned Residues 97 % Identity 28% Template c2q6wD_ PDB info PDB header:immune system Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia Resolution 2.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S
Query Conservation
Alig confidence																			.																																																														.
Template Conservation																			.																																																														.
Template Sequence		I	T	N	V	P	P	E	V	T	V	L	T	N	S	P	V	E	.	L	R	E	P	N	V	L	I	C	F	I	D	K	F	T	P	P	V	V	N	V	T	W	L	R	N	G	K	P	V	T	T	G	V	S	E	T	V	F	L	P	R	E	D	H	L	F	R	K	F	H	Y	L	P	F	L	P	S	T	E	D	.
Template Known Secondary structure					B									S	S			B	.	T	T	B												B	S	S									T	T					T	T										T	T	S														T	T		.
Template Predicted Secondary structure																			.																																																														.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	V	Y	D	C	R	V	E	H	W	G	L	D	E	P	L	L	K	H	W
Template Known Secondary structure		.	.									T	T	S	S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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