Job Description A0M8Q6 Confidence 99.86% Date Thu Apr 26 09:16:38 BST 2012 Rank 43 Aligned Residues 98 % Identity 28% Template c2p24A_ PDB info PDB header:immune system Chain: A: PDB Molecule:h-2 class ii histocompatibility antigen, a-u alpha chain; PDBTitle: i-au/mbp125-135 Resolution 2.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S	H
Query Conservation
Alig confidence															.																																																															.	.	.
Template Conservation															.																																																															.	.	.
Template Sequence		T	N	E	A	P	Q	A	T	V	F	P	K	S	.	P	V	L	L	G	Q	P	N	T	L	I	C	F	V	D	N	I	F	P	P	V	I	N	I	T	W	L	R	N	S	K	S	V	A	D	G	V	Y	E	T	S	F	F	V	N	R	D	Y	S	F	H	K	L	S	Y	L	T	F	I	P	S	D	.	.	.	D
Template Known Secondary structure													S	S	.				T	T														S	S									T	T					T	T										T	T	S														S	.	.	.	S
Template Predicted Secondary structure															.																																																															.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	Y	D	C	K	V	E	H	W	G	L	E	E	P	V	L	K	H	W	E	P
Template Known Secondary structure											T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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