Job Description A0M8Q6 Confidence 99.85% Date Thu Apr 26 09:16:38 BST 2012 Rank 56 Aligned Residues 101 % Identity 33% Template c1sebB_ PDB info PDB header:complex (mhc ii/peptide/toxin) Chain: B: PDB Molecule:hla class ii histocompatibility antigen; PDBTitle: complex of the human mhc class ii glycoprotein hla-dr1 and2 the bacterial superantigen seb Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S
Query Conservation
Alig confidence													.																																																																		.	.	.
Template Conservation													.																																																																		.	.	.
Template Sequence		Q	R	R	V	E	P	K	V	T	V	Y	.	P	S	K	T	Q	P	L	Q	H	H	N	L	L	V	C	S	V	S	G	F	Y	P	G	S	I	E	V	R	W	F	R	N	G	Q	E	E	K	A	G	V	V	S	T	G	L	I	Q	N	G	D	W	T	F	Q	T	L	V	M	L	E	T	V	P	R	S	.	.	.
Template Known Secondary structure		T			B								.		S	S				S	S	S												B	S	S									T	T					S	S			B							S	S	S														T	.	.	.
Template Predicted Secondary structure													.																																																																		.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P	A	E	C	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	V	Y	T	C	Q	V	E	H	P	S	V	T	S	P	L	T	V	E	W	R	A	R	S
Template Known Secondary structure		T										T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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