Job Description A0M8Q6 Confidence 99.84% Date Thu Apr 26 09:16:38 BST 2012 Rank 172 Aligned Residues 97 % Identity 19% Template c1s7sA_ PDB info PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2kb in complex with lcmv-derived gp33 index peptide and3 three of its escape variants Resolution 1.99 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S
Query Conservation
Alig confidence														.	.	.																																																																.	.
Template Conservation														.	.	.																																																																.	.
Template Sequence		L	R	T	D	S	P	K	A	H	V	T	H	.	.	.	H	S	R	P	E	D	K	V	T	L	R	C	W	A	L	G	F	Y	P	A	D	I	T	L	T	W	Q	L	N	G	E	E	L	I	Q	D	M	E	L	V	E	T	R	P	A	G	D	G	T	F	Q	K	W	A	S	V	V	V	P	L	G	K	E	.	.
Template Known Secondary structure		T			B									.	.	.				S	S	S												B	S	S									T	T				G	G	G										S	S	S												T	T		G	.	.
Template Predicted Secondary structure														.	.	.																																																																.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P	A	E
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Q	Y	Y	T	C	H	V	Y	H	Q	G	L	P	E	P	L	T	L	R	W	E	P
Template Known Secondary structure		.	G	G								T	T		S	S
Template Predicted Secondary structure		.
Template SS confidence
			255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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