Job Description A0M8Q6 Confidence 99.85% Date Thu Apr 26 09:16:38 BST 2012 Rank 57 Aligned Residues 95 % Identity 21% Template c1mhcA_ PDB info PDB header:histocompatibility antigen/peptide Chain: A: PDB Molecule:mhc class i antigen h2-m3; PDBTitle: model of mhc class i h2-m3 with nonapeptide from rat nd1 refined at2 2.3 angstroms resolution Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S
Query Conservation
Alig confidence																		.	.	.
Template Conservation																		.	.	.
Template Sequence		Q	R	A	D	P	P	K	A	H	V	A	H	H	P	R	P	.	.	.	K	G	D	V	T	L	R	C	W	A	L	G	F	Y	P	A	D	I	T	L	T	W	Q	K	D	E	E	D	L	T	Q	D	M	E	L	V	E	T	R	P	S	G	D	G	T	F	Q	K	W	A	A	V	V	V	P	S	G	E	E	Q	R
Template Known Secondary structure		S			B												T	.	.	.	T	S												B	S	S									T	T				T	T	T	S									S	S	S												T	T		G	G	G
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	Y	T	C	Y	V	H	H	E	G	L	T	E	P	L	A	L	K	W
Template Known Secondary structure		.	.	.								T	T	S	S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions