Job Description A0M8Q6 Confidence 99.82% Date Thu Apr 26 09:16:38 BST 2012 Rank 482 Aligned Residues 98 % Identity 28% Template c1k8iB_ PDB info PDB header:immune system Chain: B: PDB Molecule:mhc class ii h2-m beta 2 chain; PDBTitle: crystal structure of mouse h2-dm Resolution 3.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	.	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S
Query Conservation																																																					.
Alig confidence															.																																						.																										.	.	.
Template Conservation															.																																																																.	.	.
Template Sequence		R	T	R	A	P	S	V	R	V	A	Q	T	T	.	P	F	N	T	R	E	P	V	M	L	A	C	Y	V	W	G	F	Y	P	A	D	V	T	I	T	W	M	K	N	G	Q	L	V	P	S	H	S	N	K	E	K	T	A	Q	P	N	G	D	W	T	Y	Q	T	V	S	Y	L	A	L	T	P	S	Y	.	.	.
Template Known Secondary structure				B											.			S	S			S											B	S	S									T	T						S	S					S					S	S	S														T	.	.	.
Template Predicted Secondary structure															.																																																																.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	V	Y	T	C	V	V	Q	H	S	G	T	S	E	P	I	R	G	D	W	T	P
Template Known Secondary structure		T										T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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