Job Description A0M8Q6 Confidence 99.86% Date Thu Apr 26 09:16:38 BST 2012 Rank 49 Aligned Residues 97 % Identity 32% Template c1iebD_ PDB info PDB header:histocompatibility antigen Chain: D: PDB Molecule:mhc class ii i-ek; PDBTitle: histocompatibility antigen Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	K	A	A	P	S	V	T	L	F	P	P	S	S	E	E	L	Q	A	N	K	A	T	L	V	C	L	V	S	D	F	Y	P	G	A	V	T	V	A	W	K	A	D	G	S	P	V	K	V	G	V	E	T	T	K	P	S	K	Q	S	N	N	K	Y	A	A	S	S	Y	L	S	L	T	P	E	Q	W	K	S
Query Conservation
Alig confidence																					.																																																										.	.	.
Template Conservation																					.																																																										.	.	.
Template Sequence		P	R	R	V	E	P	T	V	T	V	Y	P	T	K	T	Q	P	L	E	.	H	H	N	L	L	V	C	S	V	S	D	F	Y	P	G	N	I	E	V	R	W	F	R	N	G	K	E	E	K	T	G	I	V	S	T	G	L	V	R	N	G	D	W	T	F	Q	T	L	V	M	L	E	T	V	P	Q	S	.	.	.
Template Known Secondary structure		T			B												S			S	.	S												B	S	S									T	T					S											S	S	S														T	.	.	.
Template Predicted Secondary structure																					.																																																										.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	S	Y	S	C	R	V	T	H	E	G	S	T	V	E	K	T	V	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	V	Y	T	C	Q	V	E	H	P	S	L	T	D	P	V	T	V	E	W
Template Known Secondary structure		T										T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions