Job Description Q08881 Confidence 99.44% Date Tue Apr 3 14:36:05 BST 2012 Rank 432 Aligned Residues 82 % Identity 18% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310
Predicted Secondary structure																																				.																																		.	.	.	.
Query SS confidence																																				.																																		.	.	.	.
Query Sequence		T	Y	E	W	Y	N	K	S	I	S	R	D	K	A	E	K	L	L	L	D	T	G	K	E	G	A	F	M	V	R	D	S	R	T	.	A	G	T	Y	T	V	S	V	F	T	K	A	V	V	S	E	N	N	P	C	I	K	H	Y	H	I	K	E	T	N	D	N	P	.	.	.	.	K	R	Y	Y	V	A	E	K
Query Conservation																																				.																																		.	.	.	.
Alig confidence								.																.												.												.	.	.	.	.	.																	.	.	.	.
Template Conservation								.																.																								.	.	.	.	.	.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	.	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	.	.	.	.	.	.	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G
Template Known Secondary structure				T	T			.												T	T	S		.	T	T								S	S		T	T										.	.	.	.	.	.	T	T											S		S	S	T	T	S			S					T	T
Template Predicted Secondary structure								.																.																								.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.							.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	F	D	S	I	P	L	L	I	N	Y	H	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q
Template Known Secondary structure					S	S								T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions