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Job DescriptionQ08881
Confidence100.00%DateTue Apr 3 14:36:05 BST 2012
Rank119Aligned Residues248
% Identity23%Templatec1zrzA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein kinase c, iota; PDBTitle: crystal structure of the catalytic domain of atypical2 protein kinase c-iota
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   358.360.........370.........380... ......390.... .....400.........410.. .......420.........430.
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Query Sequence  IDPSELTFVQEIGSGQFGLVHLGYWL. NKDKVAIKTIR. . . . EGAMSEEDFIEEAEVMMK. LSHPKLVQLYGVCLEQAPI
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL
Template Known Secondary structure 

STT
SSTTT

GGG

STTTTTTTSSTTB


B
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   240.........250.........260.........270.........280.........290.........300.........310.........
 
   432.......440.........450.........460.........470.........480.........490.........500.........510.
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Query Sequence  CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ
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Template Sequence  FFVIEYVNGGDLMFHMQRQRK. LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG
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S
BTTSS.

TT
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TT
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   320.........330.........340 .........350.........360.........370.........380.........390........
 
   512.......520.........530.........540.........550.........560.........570.........580.........590.
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Query Sequence  YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIM
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Template Sequence  DTTSFCG. . TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDQNTEDYLFQVILEK. QIRIPRSMSVKAASVL
Template Known Secondary structure 

B


S..
GGG

TT

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   399400..... ....410.........420.........430........ .440.........450........ .460.........470....
 
   592.......600.... .....610
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Query Sequence  NHCWKERPEDRPA. . . . . . FSRLLR
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Template Sequence  KSFLNKDPKERLGCLPQTGFADIQG
Template Known Secondary structure  T
SSSTTSTTTSTTT
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   485....490.........500.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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