Job Description Q08881 Confidence 100.00% Date Tue Apr 3 14:36:05 BST 2012 Rank 200 Aligned Residues 237 % Identity 23% Template c1ua2A_ PDB info PDB header:cell cycle, transferase Chain: A: PDB Molecule:cell division protein kinase 7; PDBTitle: crystal structure of human cdk7 Resolution 3.02 Å

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		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		T	F	V	Q	E	I	G	S	G	Q	F	G	L	V	H	L	G	Y	W	L	.	N	K	D	K	V	A	I	K	T	I	R	E	G	A	M	S	E	E	D	F	I	E	E	A	E	V	M	M	K	L	S	H	P	K	L	V	Q	L	Y	G	V	C	L	E	Q	A	P	I	C	L	V	F	E	F	M	E	H	G	C
Query Conservation																						.
Alig confidence																						.												.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		E	K	L	D	F	L	G	E	G	Q	F	A	T	V	Y	K	A	R	D	K	N	T	N	Q	I	V	A	I	K	K	I	N	.	.	.	.	.	.	R	T	A	L	R	E	I	K	L	L	Q	E	L	S	H	P	N	I	I	G	L	L	D	A	F	G	H	K	S	N	I	S	L	V	F	D	F	M	E	T	D	L
Template Known Secondary structure											T	T									S	S			S									.	.	.	.	.	.	T															T	T	B										T	T										S
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	D	Y	L	R	T	Q	R	G	L	F	A	A	E	T	L	L	G	M	C	L	D	V	C	E	G	M	A	Y	L	E	E	A	C	V	I	H	R	D	L	A	A	R	N	C	L	V	G	E	N	Q	V	I	K	V	S	D	F	G	M	T	R	F	V	L	D	D	Q	Y	T	S	S	T	G	T	K	F	P	V
Query Conservation
Alig confidence												.																																																																.	.
Template Conservation												.																																																																.	.
Template Sequence		E	V	I	I	K	D	N	S	L	V	.	L	T	P	S	H	I	K	A	Y	M	L	M	T	L	Q	G	L	E	Y	L	H	Q	H	W	I	L	H	R	D	L	K	P	N	N	L	L	L	D	E	N	G	V	L	K	L	A	D	F	G	L	A	K	S	F	G	S	P	N	R	A	Y	H	Q	.	.	V	V	T	R
Template Known Secondary structure						T	T			S	S	.			S	S																			T	T								G	G	G					T	T									G	G	G	S	T	T	T	S								.	.
Template Predicted Secondary structure												.																																																																.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.
		523	.	.	.	.	.	.		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	W	A	S	P	E	V	.	F	S	F	S	R	Y	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	V	F	S	E	G	K	I	P	Y	E	N	R	S	N	S	E	V	V	E	D	I	S	T	G	F	R	L	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		W	Y	R	A	P	E	L	L	F	G	A	R	M	Y	G	V	G	V	D	M	W	A	V	G	C	I	L	A	E	L	L	L	.	R	V	P	F	L	P	G	D	S	D	L	D	Q	L	T	R	I	F	E	T	L	G	T	P	T	E	E	Q	W	P	D	M	C	S	L	P	D	Y	V	T	F	K	S	F	P	G	I
Template Known Secondary structure		T	T							T	T		S																					.	S	S		S	S			S	S																	T	T	T	S	S	S	T	T	S	S	T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
							580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	P	R	L	A	S	T	H	V	Y	Q	I	M	N	H	C	W	K	E	R	P	E	D	R	P	A	F	S	R	L	L	R
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		P	L	H	H	I	F	S	A	A	G	D	D	L	L	D	L	I	Q	G	L	F	L	F	N	P	C	A	R	I	T	A	T	Q	A	L	K
Template Known Secondary structure								T	T															S	S	T	T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions