Job Description Q06124 Confidence 100.00% Date Wed May 9 17:40:46 BST 2012 Rank 39 Aligned Residues 255 % Identity 32% Template c3m4uB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:tyrosine specific protein phosphatase, putative; PDBTitle: crystal structure of trypanosoma brucei protein tyrosine phosphatase2 tbptp1 Resolution 2.39 Å

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		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	F	W	E	E	F	E	T	L	Q	Q	Q	E	C	K	L	L	Y	S	R	K	E	G	Q	R	Q	E	N	K	N	K	N	R	Y	K	N	I	L	P	F	D	H	T	R	V	V	L	H	D	G	D	P	N	E	P	V	S	D	Y	I	N	A	N	I	I	M	P	E	F	E	T	K	C	N	N	S	K	P	K
Query Conservation
Alig confidence																							.	.																												.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																							.	.																												.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Sequence		S	R	M	Q	R	E	F	V	Q	L	Q	R	Q	E	N	P	R	N	I	N	F	.	.	T	T	S	L	K	N	R	H	K	N	R	Y	L	D	I	L	A	N	E	E	T	I	Y	P	P	V	L	.	.	.	.	.	.	.	Y	P	Y	I	N	G	N	L	I	D	L	D	L	.	.	.	.	.	.	.	.	.	P
Template Known Secondary structure													T	T	S		G	G	G	S			.	.						T	G	G	G		S	S	T	T					S	T	T			S				.	.	.	.	.	.	.					S							S	S	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																							.	.																												.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.										80
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.						.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		K	S	Y	I	A	T	Q	G	C	L	Q	N	T	V	N	D	F	W	R	M	V	F	Q	E	N	S	R	V	I	V	M	T	T	K	E	V	E	R	G	K	S	K	C	V	K	Y	W	P	D	E	Y	A	L	K	E	Y	G	V	M	R	V	R	N	V	K	E	S	A	.	.	.	.	.	A	H	D	Y	T	L	R
Query Conservation																																																																						.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.
Template Conservation
Template Sequence		H	T	F	V	A	C	Q	A	P	V	P	Q	G	V	P	D	F	L	E	T	L	S	E	K	K	V	D	L	V	V	M	L	T	K	L	R	E	G	G	V	L	K	A	E	R	Y	W	P	E	E	E	D	S	L	S	F	D	A	I	K	V	T	R	D	A	E	A	S	Y	E	V	D	A	E	L	D	I	V	R	R
Template Known Secondary structure		S										G	G	G											T	T								S		S			T	T								S																	B	T	T	B						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	K	L	S	K	V	G	Q	A	L	L	Q	G	N	T	E	R	T	V	W	Q	Y	H	F	R	T	W	P	D	H	G	V	P	S	D	P	G	G	V	L	D	F	L	E	E	V	H	H	K	Q	E	S	I	M	D	A	G	P	V	V	V	H	C	S	A	G	I	G	R	T	G	T	F	I	V	I	D	I	L
Query Conservation
Alig confidence								.	.	.	.	.	.																																					.	.	.	.
Template Conservation								.	.	.	.	.	.																																					.	.	.	.
Template Sequence		P	L	V	I	H	V	.	.	.	.	.	.	P	G	K	P	M	H	R	V	L	Q	V	Q	Y	V	G	W	P	D	H	G	V	P	E	S	A	A	S	F	D	E	L	L	S	V	I	K	.	.	.	.	N	C	V	T	T	S	P	I	L	V	H	C	S	A	G	I	G	R	T	G	T	L	I	G	A	Y	A	A
Template Known Secondary structure								.	.	.	.	.	.	T	T	S												S			T	T	S			S														.	.	.	.	T				S	S							S	S	S	S
Template Predicted Secondary structure								.	.	.	.	.	.																																					.	.	.	.
Template SS confidence
		176	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	I	I	R	E	K	G	V	D	C	D	I	D	V	P	K	T	I	Q	M	V	R	S	Q	R	S	G	M	V	Q	T	E	A	Q	Y	R	F	I	Y	M	A	V	Q	H	Y	I	E	T
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		L	L	H	I	E	R	G	I	.	L	T	D	S	T	V	Y	S	I	V	A	A	M	K	Q	K	R	F	G	M	V	Q	R	L	E	Q	Y	A	V	I	Y	M	T	V	L	G	R	L	G	V
Template Known Secondary structure							T	T		.			T	T													S	T	T		S		S															T	T
Template Predicted Secondary structure										.
Template SS confidence
		246	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions