Job Description P07948 Confidence 100.00% Date Fri May 25 10:07:35 BST 2012 Rank 217 Aligned Residues 248 % Identity 23% Template c3mi9A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb Resolution 2.10 Å

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		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																									.												.	.	.
Query SS confidence																									.												.	.	.
Query Sequence		E	S	I	K	L	V	K	R	L	G	A	G	Q	F	G	E	V	W	M	G	Y	Y	N	.	N	S	T	K	V	A	V	K	T	L	K	.	.	.	P	G	T	M	S	V	Q	A	F	L	E	E	A	N	L	M	K	T	L	Q	H	D	K	L	V	R	L	Y	A	V	V	T	R	E	E	P	I	Y	I	I	T	E
Query Conservation																									.												.	.	.
Alig confidence																									.												.	.	.
Template Conservation
Template Sequence		S	K	Y	E	K	L	A	K	I	G	Q	G	T	F	G	E	V	F	K	A	R	H	R	K	T	G	Q	K	V	A	L	K	K	V	L	M	E	N	E	K	E	G	F	P	I	T	A	L	R	E	I	K	I	L	Q	L	L	K	H	E	N	V	V	N	L	I	E	I	C	R	T	K	G	S	I	Y	L	V	F	D
Template Known Secondary structure		G	G								S	S		S	T	T	S							T	T	T												S	S		S	S	S	S																	T	T	B
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	A	K	G	S	L	L	D	F	L	K	S	D	E	G	G	K	V	L	L	P	K	L	I	D	F	S	A	Q	I	A	E	G	M	A	Y	I	E	R	K	N	Y	I	H	R	D	L	R	A	A	N	V	L	V	S	E	S	L	M	C	K	I	A	D	F	G	L	A	R	V	I	E	D	N	E	Y	T	A	R
Query Conservation
Alig confidence													.	.
Template Conservation													.	.
Template Sequence		F	C	E	H	D	L	A	G	L	L	S	.	.	N	V	L	V	K	F	T	L	S	E	I	K	R	V	M	Q	M	L	L	N	G	L	Y	Y	I	H	R	N	K	I	L	H	R	D	M	K	A	A	N	V	L	I	T	R	D	G	V	L	K	L	A	D	F	G	L	A	R	A	F	S	L	A	K	N	S	Q	P
Template Known Secondary structure				S									.	.		T	T	S																								T	T							S	G	G	G					T	T	S								T	T								S	S	S	S
Template Predicted Secondary structure													.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		401	.	.	.			.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.																.																																																		.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																.																																																		.	.	.	.	.	.	.	.	.
Query Sequence		E	G	A	K	.	.	F	P	I	K	W	T	A	P	E	A	I	N	F	G	C	.	F	T	I	K	S	D	V	W	S	F	G	I	L	L	Y	E	I	V	T	Y	G	K	I	P	Y	P	G	R	T	N	A	D	V	M	T	A	L	S	Q	G	Y	R	M	P	R	V	E	N	C	.	.	.	.	.	.	.	.	.
Query Conservation						.	.																.																																																		.	.	.	.	.	.	.	.	.
Alig confidence						.	.																.																				.																														.	.	.	.	.	.	.	.	.
Template Conservation																																											.
Template Sequence		N	R	Y	N	R	V	V	T	L	W	Y	R	P	P	E	L	L	L	G	E	R	D	Y	G	P	P	I	D	L	W	G	A	G	C	I	M	A	E	M	W	T	.	R	S	P	I	M	Q	G	N	T	E	Q	H	Q	L	A	L	I	S	Q	L	C	G	S	I	T	P	E	V	W	P	N	V	D	N	Y	E	L	Y
Template Known Secondary structure								S		G	G	G							T	T			S			T																	.	S	S		S				S	S																	T	T	T	S	T	T	G	G	G		G	G	G
Template Predicted Secondary structure																																											.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
																								469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	E	L	Y	D	I	M	K	M	C	W	K	E	K	A	E	E	R	P	T	F	D	Y	L	Q	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	L	E	L	V	K	G	Q	K	R	K	V	K	D	R	L	K	A	Y	V	R	D	P	Y	A	L	D	L	I	D	K	L	L	V	L	D	P	A	Q	R	I	D	S	D	D	A	L	N
Template Known Secondary structure		T	S	S				S	S																										S		S	S	G	G	G	S								T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions