249 c2vagA_ Probab=100.00  E-value=9.1e-38  Score=228.68  Aligned_columns=261  Identities=21%

Q ss_pred             EEEHHHEEEEECCCCCCCEEEEEEEECC--CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE------EEEEEEEEEC
Q ss_conf             3126656894102537880799999779--9389999988531388999999999985499847------0288838678
Q batch____       241 EIPRESIKLVKRLGAGQFGEVWMGYYNN--STKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKL------VRLYAVVTRE  312 (512)
Q Consensus       241 ~i~~~~~~~~~~LG~G~fg~V~~~~~~~--~~~VAvK~l~~~~~~~~~~~~E~~~l~~l~H~nI------v~l~g~~~~~  312 (512)
                      ++-.+.|++.++||+|+||.||+|+++.  ++.||||+++.+....+.+++|+.+|++|+|+|+      +.+.+.....
T Consensus         9 ~~l~~~Y~i~~~LG~G~fG~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~Ei~il~~l~h~~~~~~~~~~~~~~~~~~~   88 (330)
T c2vagA_           9 DVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH   88 (330)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred             CEECCCEEEEEEEEECCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCC
T ss_conf             48678259999987628848999999767983999999839905689999999999984312223312220000123332


Q ss_pred             CEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf             95899997888886889998358888899999999999999988653178071144664333433211222234302441
Q batch____       313 EPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVI  392 (512)
Q Consensus       313 ~~~~iv~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~qia~~l~yLh~~~iiH~dl~~~nili~~~~~~kl~Dfgls~~~  392 (512)
                      ..++++++++ .+.....................+..+++.++.++|..+++|+|+++.|++++..+..++.+|+.+...
T Consensus        89 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~nil~~~~~~~~~~~~~~~~~~  167 (330)
T c2vagA_          89 GHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNKRDERTL  167 (330)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEECCCEEEEE
T ss_pred             CEECCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCC
T ss_conf             0000122112-367521112221110136565555544555554311012222345541589857886200034543344


Q ss_pred             CCCCCEEEE----------ECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC----
Q ss_conf             467621333----------135785328877994689875789999999999999388999987798999999980----
Q batch____       393 EDNEYTARE----------GAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNADVMTALSQ----  458 (512)
Q Consensus       393 ~~~~~~~~~----------~~~~~~~~~aPE~l~~~~~t~ksDvwS~Gv~l~El~t~G~~P~~~~~~~~~~~~i~~----  458 (512)
                      .........          .......+.+||......++.++|+|++|+++|++.+ ++.|+...+..+.+..+..    
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~  246 (330)
T c2vagA_         168 INPDIKVVDFGSATYDDEHHSTLVRHYRAPEVILALGWSQPCDVWSIGCILIEYYL-GFTVFPTHDSKEHLAMMERILGP  246 (330)
T ss_dssp             SCCCEEECCCSSCEETTSCCCSCCCCSCCHHHHTTSCCSTHHHHHHHHHHHHHHHH-SSCSCCCSCHHHHHHHHHHHHCS
T ss_pred             CCCCCEEECCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEEEEEECCCC-CCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             44321000146633267542001210232100000111123542102258731004-88988758968999999851388


Q ss_pred             ---------------------------------------CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
Q ss_conf             ---------------------------------------89889875689999999998636896786999999999999
Q batch____       459 ---------------------------------------GYRMPRVENCPDELYDIMKMCWKEKAEERPTFDYLQSVLDD  499 (512)
Q Consensus       459 ---------------------------------------g~~~~~p~~~p~~l~~li~~c~~~~P~~RPs~~~i~~~L~~  499 (512)
                                                             ......+..+++++.+||.+||..||++|||+++|++  ..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~elL~--Hp  324 (330)
T c2vagA_         247 LPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK--HP  324 (330)
T ss_dssp             CCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT--SG
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC--CC
T ss_conf             9988974420121235465665321000111001233310023565458999999999866588111776789967--91


Q ss_pred             HHHCCC
Q ss_conf             873018
Q batch____       500 FYTATE  505 (512)
Q Consensus       500 ~~~~~~  505 (512)
                      ||.+.+
T Consensus       325 ~f~~ir  330 (330)
T c2vagA_         325 FFDLLK  330 (330)
T ss_dssp             GGGGGC
T ss_pred             CHHHCC
T ss_conf             144039


