Email l.a.kelley@imperial.ac.uk Description A0PJM3 Date Tue Apr 3 14:51:25 BST 2012 Unique Job ID c4985a30697b406b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1wlja_ 99.9 35 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 2 d2guia1 99.7 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 3 d2igia1 99.6 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 4 d1j9aa_ 99.6 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 5 c2p1jB_ 99.5 21 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii polc-type; PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima 6 c2gbzA_ 99.5 17 PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix 7 c3tr8A_ 99.5 20 PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii 8 c3cm6A_ 99.5 14 PDB header:hydrolase, apoptosis Chain: A: PDB Molecule:cell death-related nuclease 4; PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er 9 d1w0ha_ 99.5 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 10 c1zbhA_ 99.5 16 PDB header:hydrolase/rna Chain: A: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease 11 c2xriA_ 99.4 17 PDB header:hydrolase Chain: A: PDB Molecule:eri1 exoribonuclease 3; PDBTitle: crystal structure of human eri1 exoribonuclease 3 12 d1y97a1 99.4 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 13 d2f96a1 99.3 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 14 c3u6fA_ 99.3 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:three prime repair exonuclease 1; PDBTitle: mouse trex1 d200n mutant 15 d3b6oa1 99.3 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 16 c1zbuB_ 99.3 16 PDB header:hydrolase Chain: B: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: crystal structure of full-length 3'-exonuclease 17 d2qxfa1 99.2 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 18 c2is3B_ 98.6 16 PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease t; PDBTitle: crystal structure of escherichia coli rnase t 19 d1kfsa1 98.3 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 20 c2e6mA_ 98.3 16 PDB header:hydrolase Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog; PDBTitle: structure of mouse werner exonuclease domain 21 c1yt3A_ not modelled 98.2 19 PDB header:hydrolase,translation Chain: A: PDB Molecule:ribonuclease d; PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing 22 c2kzzA_ not modelled 98.2 18 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: klenow fragment with normal substrate and zinc only 23 d1yt3a3 not modelled 97.9 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 24 c2xcmE_ 97.5 21 PDB header:chaperone/protein binding Chain: E: PDB Molecule:rar1; PDBTitle: complex of hsp90 n-terminal, sgt1 cs and rar1 chord2 domain 25 d2hbka2 not modelled 97.5 21 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 26 c3cymA_ not modelled 97.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bad_0989; PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis 27 c2hbkA_ not modelled 97.4 22 PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn 28 d1uoca_ not modelled 97.3 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease 29 c2yrtA_ 97.2 27 PDB header:transcription Chain: A: PDB Molecule:chord containing protein-1; PDBTitle: solution structure of the chord domain of human chord-2 containing protein 1 30 c1njzA_ not modelled 97.1 16 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase i; PDBTitle: cytosine-thymine mismatch at the polymerase active site 31 c3sahA_ not modelled 97.1 21 PDB header:hydrolase Chain: A: PDB Molecule:exosome component 10; PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site 32 d1vk0a_ not modelled 97.1 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 33 d2d5ra1 not modelled 97.0 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease 34 c2p51A_ not modelled 97.0 17 PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit 35 d2hhva1 not modelled 96.8 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 36 d1wn7a1 not modelled 96.4 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 37 d1tgoa1 not modelled 95.9 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 38 c2k0nA_ 95.3 11 PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription PDBTitle: solution structure of yeast gal11p kix domain 39 d1qhta1 not modelled 95.0 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 40 c4ktqA_ not modelled 94.8 17 PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna 41 d1d5aa1 not modelled 94.5 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 42 c1q8iA_ not modelled 94.3 19 PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii; PDBTitle: crystal structure of escherichia coli dna polymerase ii 43 d1q8ia1 not modelled 94.0 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 44 c2dtuA_ not modelled 93.7 19 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog 45 c1s5jA_ not modelled 93.1 18 PDB header:transferase Chain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus 46 d1ih7a1 not modelled 92.3 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 47 c3iayA_ not modelled 91.4 21 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: ternary complex of dna polymerase delta 48 c1tk0A_ not modelled 91.0 15 PDB header:transferase/electron transport/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site 49 c2a1sC_ not modelled 89.5 17 PDB header:hydrolase Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of native parn nuclease domain 50 d1s5ja1 not modelled 89.3 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 51 c1d5aA_ not modelled 88.9 19 PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase); PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom 52 c3d45B_ not modelled 86.4 15 PDB header:hydrolase Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of mouse parn in complex with m7gpppg 53 d1noya_ not modelled 86.3 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 54 c2ys2A_ not modelled 84.9 25 PDB header:transferase Chain: A: PDB Molecule:cytoplasmic tyrosine-protein kinase bmx; PDBTitle: solution structure of the btk motif of human cytoplasmic2 tyrosine-protein kinase bmx 55 d1x9ma1 not modelled 84.4 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 56 c2e6iA_ 84.2 15 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase itk/tsk; PDBTitle: solution structure of the btk motif of tyrosine-protein2 kinase itk from human 57 d1btka_ not modelled 82.5 34 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 58 c2vwkA_ not modelled 82.0 18 PDB header:dna replication Chain: A: PDB Molecule:dna polymerase; PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant 59 c2gv9B_ not modelled 81.9 13 PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase 60 c1i6vD_ 78.7 31 PDB header:transcription Chain: D: PDB Molecule:dna-directed rna polymerase; PDBTitle: thermus aquaticus core rna polymerase-rifampicin complex 61 d1i6vd_ 78.7 31 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 62 d1ynjd1 76.4 29 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 63 c1cmwA_ not modelled 74.5 18 PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain 64 c2gutA_ not modelled 74.3 12 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 65 c3bdvB_ not modelled 60.2 35 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein duf1234; PDBTitle: crystal structure of a putative yden-like hydrolase (eca3091) from2 pectobacterium atrosepticum scri1043 at 1.66 a resolution 66 d3bzka5 not modelled 56.7 27 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 67 c3ho6B_ not modelled 53.1 16 PDB header:toxin Chain: B: PDB Molecule:toxin a; PDBTitle: structure-function analysis of inositol hexakisphosphate-2 induced autoprocessing in clostridium difficile toxin a 68 c3qqcA_ not modelled 51.2 18 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain 69 c3zyqA_ not modelled 48.2 14 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 70 d1wiga2 not modelled 45.8 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 71 c1dvpA_ not modelled 42.4 18 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 72 c1pqvS_ not modelled 40.0 15 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 73 c1y1yS_ not modelled 40.0 15 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 74 d1wfla_ not modelled 38.8 26 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 75 c2kvfA_ not modelled 37.8 30 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 76 d1sb0a_ not modelled 34.5 11 Fold:Kix domain of CBP (creb binding protein) Superfamily:Kix domain of CBP (creb binding protein) Family:Kix domain of CBP (creb binding protein) 77 c3hz6A_ not modelled 33.1 16 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 78 c2e72A_ not modelled 32.8 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pogo transposable element with znf domain; PDBTitle: solution structure of the zinc finger domain of human2 kiaa0461 79 d1ibia1 not modelled 32.4 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 80 c2cftA_ not modelled 32.2 15 PDB header:phosphatase Chain: A: PDB Molecule:pyridoxal phosphate phosphatase; PDBTitle: crystal structure of human pyridoxal 5'-phosphate2 phosphatase with its substrate 81 d1g47a1 not modelled 31.5 32 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 82 d1gpla2 not modelled 31.4 34 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 83 d1x6ha1 not modelled 30.2 44 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 84 c3psfA_ not modelled 29.8 18 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 85 c2elrA_ not modelled 28.7 19 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 15th c2h2 zinc finger of human2 zinc finger protein 406 86 c2aklA_ not modelled 27.5 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 87 c2jr7A_ not modelled 27.1 16 PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 88 d2k4xa1 not modelled 27.1 21 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 89 c2lo3A_ not modelled 26.2 23 PDB header:transcription Chain: A: PDB Molecule:saga-associated factor 73; PDBTitle: solution structure of sgf73(59-102) zinc finger domain 90 c2zkr4_ not modelled 25.8 23 PDB header:ribosomal protein/rna Chain: 4: PDB Molecule:60s ribosomal protein l44e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 91 c2f9yB_ not modelled 25.7 16 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 92 d2f9yb1 not modelled 25.7 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 93 d1ubdc2 not modelled 24.2 40 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 94 d1b8ta3 not modelled 23.8 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 95 c3lp5A_ not modelled 23.2 12 PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 96 d1pjaa_ not modelled 23.1 8 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterases 97 c1pjaA_ not modelled 23.1 8 PDB header:hydrolase Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor; PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2) 98 d2b4jc1 not modelled 22.9 15 Fold:N-cbl like Superfamily:HIV integrase-binding domain Family:HIV integrase-binding domain 99 d1jvna1 not modelled 22.8 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 100 d1uxoa_ not modelled 22.5 22 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:YdeN-like 101 c2gb5B_ not modelled 22.4 23 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 102 d2b0la1 not modelled 22.2 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CodY HTH domain 103 c1t39A_ not modelled 21.9 22 PDB header:transferase/dna Chain: A: PDB Molecule:methylated-dna--protein-cysteine PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna 104 c2co8A_ not modelled 21.6 23 PDB header:metal binding protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains 105 d1ywsa1 not modelled 21.3 16 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 106 c2zyiB_ not modelled 21.2 28 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 107 d1xpaa2 not modelled 20.8 44 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain 108 d1ydfa1 not modelled 20.6 11 Fold:HAD-like Superfamily:HAD-like Family:NagD-like 109 d2yt9a1 not modelled 20.4 33 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 110 c2k42A_ not modelled 20.2 21 PDB header:signaling protein Chain: A: PDB Molecule:wiskott-aldrich syndrome protein; PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector 111 c1b8tA_ not modelled 20.1 16 PDB header:contractile Chain: A: PDB Molecule:protein (crp1); PDBTitle: solution structure of the chicken crp1 112 d1wgea1 not modelled 20.1 16 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger