Job Description A0PJM3 Confidence 97.01% Date Tue Apr 3 14:51:25 BST 2012 Rank 33 Aligned Residues 149 % Identity 16% Template d2d5ra1 SCOP info Ribonuclease H-like motif Ribonuclease H-like CAF1-like ribonuclease Resolution 2.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		410	.	.	.	.	.	.	.	.	.	420	.	.																									.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	L	D	C	E	M	C	Y	T	T	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	M	D	T	E	F	P	G	V	V	A	R	P	I	G	E	F	R	S	N	A	D	Y	Q	Y	Q	L	L	R	C	N	V	D	L	L	K	I	I	Q	L	G	L	T	F	M	N	E	Q	G	E	Y	P	P	G	T	S	T	W	Q	F	N	F	K	F	N	L	T	E	D	M	Y	A	Q	D	S	I	E	L	L
Template Known Secondary structure																	S			S	S														T	T													T	T	S				S	S								B				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.				480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500																		.	.	.	.				.	.	.	.	.	510	.
Predicted Secondary structure																											.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Query SS confidence																											.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Query Sequence		R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	.	.	.	S	F	F	S	A	Q	T	I	L	I	G	H	S	L	E	S	D	L	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	H	.	.	.	S	T	V	V	D	T	A
Query Conservation																											.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Alig confidence																											.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template Conservation
Template Sequence		T	T	S	G	I	Q	F	K	K	H	E	E	E	G	I	E	T	Q	Y	F	A	E	L	L	M	T	S	G	V	V	L	C	E	G	V	K	W	L	S	F	H	S	G	Y	D	F	G	Y	L	I	K	I	L	T	N	S	N	L	P	E	E	E	L	D	F	F	E	I	L	R	L	F	F	P	V	I	Y	D	V	K
Template Known Secondary structure					T											B											T	T	T	S	S	S	S	S	S						S	S														T	S				S	S													S
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W	K	V	R
Query Conservation
Alig confidence													.	.									.										.	.
Template Conservation													.	.									.										.	.
Template Sequence		Y	L	M	K	S	C	K	N	L	K	G	.	.	G	L	Q	E	V	A	E	Q	.	L	E	L	E	R	I	G	P	Q	.	.	H	Q	A	G	S	D	S	L	L	T	G	M	A	F	F	K	M	R	E
Template Known Secondary structure				G	G	G		T	T			S	.	.	S								.		T					S	S	T	.	.	T	S
Template Predicted Secondary structure													.	.									.										.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions