Job Description A0PJM3 Confidence 76.41% Date Tue Apr 3 14:51:25 BST 2012 Rank 62 Aligned Residues 59 % Identity 29% Template d1ynjd1 SCOP info beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase RNA-polymerase beta-prime Resolution 3.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.							.	.	.	.	.	320															.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																	.																			.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																			.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	T	Q	D	Q	L	K	E	N	G	Y	P	F	P	.	H	P	E	R	P	G	G	A	V	L	F	T	G	Q	G	K	G	P	.	.	.	.	.	.	G	D	S	S	C	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	C	C	R	C	G	T	E	Y	L	V	S	S	S	G	R	C	V	R	D
Query Conservation																	.																			.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																			.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		L	A	S	P	E	K	I	R	S	W	S	Y	G	E	V	E	K	P	E	T	I	N	Y	R	T	L	K	P	E	R	D	G	L	F	D	E	R	I	F	G	P	I	K	D	Y	E	C	A	C	G	K	Y	K	R	Q	R	F	E	G	K	V	C	E	R	C	G	V	E	V	T	R	S	I	V	.	.	.	.	.	.
Template Known Secondary structure													S	S	B			S						S	S	S					S	S	S	T	T		T	T	T	S			S	S	S	S	S		S	S						S	S	S						S	S	S					S		G	G	G	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		341	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	C	Y	Y	H	W	G
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	R	R	Y	R	M	G
Template Known Secondary structure		.	.	G	G	T
Template Predicted Secondary structure		.	.
Template SS confidence
				86	.	.	.	90	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions