Job Description A0PJM3 Confidence 97.27% Date Tue Apr 3 14:51:25 BST 2012 Rank 28 Aligned Residues 147 % Identity 19% Template d1uoca_ SCOP info Ribonuclease H-like motif Ribonuclease H-like CAF1-like ribonuclease Resolution 2.3

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		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420																.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	G	I	Y	A	L	D	C	E	M	C	Y	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.												.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.												.	.	.	.	.	.	.
Template Sequence		Q	Y	N	H	V	S	I	S	T	E	F	V	G	S	K	V	D	Y	H	Y	Q	T	M	R	A	N	V	D	F	L	N	P	I	Q	L	G	.	L	S	L	S	D	A	N	G	N	K	P	.	.	.	.	.	.	.	D	N	G	P	S	T	W	Q	F	N	F	E	F	D	P	K	K	E	I	M	S	T	E	S	L
Template Known Secondary structure		T	S																										T	T								.						T	T					.	.	.	.	.	.	.	S	S	S		S						B				T	T
Template Predicted Secondary structure																																						.												.	.	.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.								.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
							457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480				.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500																					.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																									.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																									.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	.	.	.	F	F	S	A	Q	T	I	L	I	G	H	S	L	E	S	D	L	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	H	S	T	V	V
Query Conservation		.	.	.	.	.																									.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																									.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	L	R	K	S	G	I	N	F	E	K	H	E	N	L	G	I	D	V	F	E	F	S	Q	L	L	M	D	S	G	L	M	M	D	D	S	V	T	W	I	T	Y	H	A	A	Y	D	L	G	F	L	I	N	I	L	M	N	D	S	M	P	N	N	K	E	D	F	E	W	W	V	H	Q	Y	M	P	N	F	Y
Template Known Secondary structure							T	T											B											T	S	S		S	S		T	T	S					S	S	T	T											T	T	S				S	S													S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W	K	V	R
Query Conservation
Alig confidence																										.										.	.
Template Conservation																										.										.	.
Template Sequence		D	L	N	L	V	Y	K	I	I	Q	E	F	K	N	Q	Y	S	L	T	T	L	A	D	E	.	L	G	L	P	R	F	S	I	F	.	.	T	T	T	G	G	Q	S	L	L	M	L	L	S	F	C	Q	L	S	K
Template Known Secondary structure											T	T	T					S								.	T	T					G	G	G	.	.	G	S
Template Predicted Secondary structure																										.										.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions