Job Description A0PJM3 Confidence 94.95% Date Tue Apr 3 14:51:25 BST 2012 Rank 39 Aligned Residues 137 % Identity 17% Template d1qhta1 SCOP info Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Resolution 2.10

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		408	.	410	.	.	.	.	.	.	.					.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure												.	.	.	.																																																																		.
Query SS confidence												.	.	.	.																																																																		.
Query Sequence		G	I	Y	A	L	D	C	E	M	C	.	.	.	.	Y	T	T	H	G	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	F	F	.
Query Conservation												.	.	.	.																																																																		.
Alig confidence												.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	M	L	A	F	A	I	A	T	L	Y	H	E	G	E	E	F	G	T	G	P	I	L	M	I	S	Y	A	D	G	S	E	A	R	V	I	T	W	K	K	I	D	L	P	Y	V	D	V	V	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	E	M	I	K	R	F	L	R	V	V	R
Template Known Secondary structure														T	T			T	T		S										S	S							S	S					S	S					S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																	.	.	.	190	.	.	.	.	.	.	.	.	.
				483	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500																																.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	S	A	Q	T	I	L	I	G	H	S	L	E	S	.	D	L	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	H	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N
Query Conservation		.	.														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.				.										.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation							.																																																																				.
Template Sequence		E	K	D	P	D	.	V	L	I	T	Y	N	G	D	N	F	D	F	A	Y	L	K	K	R	C	E	E	L	G	I	K	F	T	L	G	R	D	G	S	E	P	K	I	Q	R	M	G	D	R	F	A	V	E	V	K	G	R	I	H	F	D	L	Y	P	V	I	R	R	T	I	N	L	P	.	T	Y	T	L	E	A
Template Known Secondary structure						S	.					S	S	T	T	T	T												T	T						S	T	T	S									T	T							T	T	S													S			S	.
Template Predicted Secondary structure							.																																																																				.
Template SS confidence
		200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.										.	.	.								.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Query Sequence		L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	.	.	.	.	.	.	.	.	.	G	H	N	.	.	.	.	.	.	.	S	S	E	D	A	N	A	C	L	Q	L	V	M	W	K	V
Query Conservation																	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	E	A	V	F	G	K	P	K	E	K	V	Y	A	E	E	I	A	Q	A	W	E	S	G	E	G	L	E	R	V	A	R	Y	S	M	E	D	A	K	V	T	Y	E	L	G	R	E	F	F
Template Known Secondary structure																								T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions