Job Description A0PJM3 Confidence 99.27% Date Tue Apr 3 14:51:25 BST 2012 Rank 14 Aligned Residues 160 % Identity 20% Template c3u6fA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:three prime repair exonuclease 1; PDBTitle: mouse trex1 d200n mutant Resolution 2.30 Å

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		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.																				.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																				.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	D	A	Y	P	G	I	Y	A	L	D	C	E	M	C	Y	T	.	T	H	G	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E
Query Conservation																				.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	H	G	H	M	Q	T	L	I	F	L	D	L	E	A	T	G	L	P	S	S	R	P	E	V	T	E	L	C	L	L	A	V	H	R	R	A	L	E	N	S	Q	G	H	P	P	P	V	P	R	P	P	R	V	V	D	K	L	S	L	C	I	A	P	G	K	A	C	S	P	G	A	S	E	I	T	G	L	S	K
Template Known Secondary structure							S										S	S		G	G	G																						S	S	S								S	S											S	S											S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		462	.	.	.	.	.	.	.	470						.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500													.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure											.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	V	A	K	T	S	I	T	.	.	.	.	.	L	P	Q	V	Q	A	I	L	L	S	F	F	S	A	Q	T	I	L	I	G	H	S	L	E	S	D	L	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	H	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R
Query Conservation											.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	L	E	V	Q	G	R	Q	R	F	D	D	N	L	A	I	L	L	R	A	F	L	Q	R	Q	P	Q	P	C	C	L	V	A	H	N	G	D	R	Y	D	F	P	L	L	Q	T	E	L	A	R	L	S	T	P	S	P	L	D	G	T	F	C	V	D	S	I	A	A	L	K	A	L	E	Q	A	R	K	S	Y
Template Known Secondary structure							T	T				S														T	S		S	S						T	T	T	T	T	T											T		S	S			S		T	T															T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W	K	V	R	Q
Query Conservation
Alig confidence																			.	.	.
Template Conservation																			.	.	.
Template Sequence		S	L	G	S	I	Y	T	R	L	Y	W	Q	A	P	T	D	S	.	.	.	H	T	A	E	G	N	V	L	T	L	L	S	I	C	Q	W	K	P	Q	A
Template Known Secondary structure		S										S	S			S		S	.	.	.	S	S													T	S	S
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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