Job Description A0PJM3 Confidence 51.21% Date Tue Apr 3 14:51:25 BST 2012 Rank 68 Aligned Residues 56 % Identity 18% Template c3qqcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain Resolution 3.30 Å

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		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		L	L	T	Q	D	Q	L	K	E	N	G	Y	P	F	P	H	P	E	R	P	G	G	A	V	L	F	T	G	Q	G	K	G	P	G	D	S	S	C	R	.	V	C	C	R	C	G	T	E	Y	L	V	S	S	S	G	R	C	V	R	D	Q	L	C	Y	Y	H	W	G
Query Conservation																																									.
Alig confidence																																									.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	S	P	Q	E	I	R	K	M	S	A	V	E	V	T	V	P	D	T	Y	D	P	I	E	G	G	V	M	D	K	R	M	G	V	I	D	P	G	L	R	C	E	T	C	G	G	R	A	G	.	.	.	.	.	.	.	.	.	.	.	E	C	P	G	H	F	G
Template Known Secondary structure		B									T							B									S	B	S	S		S	S	S				S	S					S	S	S				S	S	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.												.	.	.	.	130	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions