Job Description A0PJM3 Confidence 29.78% Date Tue Apr 3 14:51:25 BST 2012 Rank 84 Aligned Residues 77 % Identity 18% Template c3psfA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) Resolution 2.59 Å

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		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	T	F	K	K	E	L	S	R	D	A	Y	P	G	I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q
Query Conservation
Alig confidence																							.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	P	F	I	P	N	V	R	D	P	K	I	P	K	I	L	S	L	T	C	.	.	G	Q	G	R	F	G	A	D	A	I	I	A	V	Y	V	N	R	K	G	D	F	I	R	D	Y	K	I	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	F	D	K	T	N	P	E	K
Template Known Secondary structure							S		T	T	S												.	.	T	T			T	T	T	S									T	T	S										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S	S
Template Predicted Secondary structure																							.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.			.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.																			.	.	.	.	.	790	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.				.	.	.	.	.	490
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		V	Q	A	I	L	L	S	F	F	S	A	.	.	.	Q	T	I	L	I	G
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		F	E	D	T	L	D	N	I	I	Q	S	C	Q	P	N	A	I	G	I	N
Template Known Secondary structure																S
Template Predicted Secondary structure
Template SS confidence
		795	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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