Job Description A0PJM3 Confidence 91.38% Date Tue Apr 3 14:51:25 BST 2012 Rank 47 Aligned Residues 141 % Identity 21% Template c3iayA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: ternary complex of dna polymerase delta Resolution 2.00 Å

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		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.							.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.					470	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																																																.	.	.	.
Query SS confidence																	.	.	.	.	.	.																																																.	.	.	.
Query Sequence		G	I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	.	.	.	.	.	.	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	.	.	.	.	T	L	P	Q	V	Q	A	I
Query Conservation																	.	.	.	.	.	.																																																.	.	.	.
Alig confidence																	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	M	S	F	D	I	E	C	A	G	R	I	G	V	F	P	E	P	E	Y	D	P	V	I	Q	I	A	N	V	V	S	I	A	.	.	.	.	.	.	.	.	.	.	G	A	K	K	P	F	I	R	N	V	F	T	L	N	T	C	S	P	I	T	G	S	M	I	F	S	H	A	T	E	E	E	M	L	S	N
Template Known Secondary structure														T	T	S				T	T	T													T	.	.	.	.	.	.	.	.	.	.	T		S	S		S								S					B	T	T	B						S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.											350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		478	.	480	.	.				.	.	.	.	.	.	.	490	.	.	.	.		.	.	.	.	.	500								.	.	.	.	.																																					.	.	.	.	510
Predicted Secondary structure							.	.	.													.							.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.													.							.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	F	F	.	.	.	S	A	Q	T	I	L	I	G	H	S	L	E	.	S	D	L	L	A	L	.	.	.	.	.	.	.	K	L	I	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	V	D	T
Query Conservation							.	.	.													.							.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.				.									.							.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		W	R	N	F	I	I	K	V	D	P	D	.	V	I	I	G	Y	N	T	T	N	F	D	I	P	Y	L	L	N	R	A	K	A	L	K	V	N	D	F	P	Y	F	G	R	L	K	T	V	K	Q	E	I	K	E	S	V	F	S	S	K	A	Y	G	T	R	E	T	K	N	V	N	I	D	G	R	L	Q	L	D	L
Template Known Secondary structure												S	.					S	S	T	T	T	T												T	T		T	T		S			S	S	B	T	T					B								T	T	T								B			T	T
Template Predicted Secondary structure													.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.						.	.	.	540	.	.	.							.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure																												.	.	.	.	.								.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.								.	.	.	.	.	.
Query Sequence		A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	.	.	.	.	.	I	I	Q	D	S	Q	D	.	.	.	.	.	.	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W
Query Conservation																												.	.	.	.	.								.	.	.	.	.	.
Alig confidence													.															.	.	.	.	.								.	.	.	.	.	.
Template Conservation													.
Template Sequence		L	Q	F	I	Q	R	E	Y	K	L	R	.	S	Y	T	L	N	A	V	S	A	H	F	L	G	E	Q	S	I	I	S	D	L	Q	N	G	D	S	E	T	R	R	R	L	A	V	Y	C	L	K	D	A	Y	L	P	L	R	L	M	E	K
Template Known Secondary structure												S	.																							T	S
Template Predicted Secondary structure													.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions