Job Description A0PJM3 Confidence 97.45% Date Tue Apr 3 14:51:25 BST 2012 Rank 26 Aligned Residues 112 % Identity 18% Template c3cymA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bad_0989; PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis Resolution 2.10 Å

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		408	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure										.																.
Query SS confidence										.																.
Query Sequence		G	I	Y	A	L	D	C	E	.	M	C	Y	T	T	H	G	L	E	L	T	R	V	T	V	.	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	F	F	S	A	Q
Query Conservation										.																.
Alig confidence										.																.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		G	S	L	A	A	D	A	E	R	A	S	G	F	R	Y	G	H	E	D	W	L	V	Q	F	K	R	D	G	A	G	I	G	L	L	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	L	A	A	A	G	A	D	W	N	D	F	N	R	A	V	.	.	.	.	.	G	D
Template Known Secondary structure												T	T	T	S	S	S												T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T											.	.	.	.	.	T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.																					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500				.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		T	I	L	I	G	H	S	L	E	S	D	L	L	A	L	.	.	.	K	L	I	H	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	G	H	N
Query Conservation																	.	.	.
Alig confidence																	.	.	.																					.	.
Template Conservation																																								.	.
Template Sequence		A	V	W	I	L	H	D	S	L	Q	D	L	P	G	F	D	E	L	G	M	E	P	Q	R	L	F	D	T	E	I	A	A	R	L	L	G	L	K	.	.	R	F	G	L	A	A	V	T	E	H	F	L	G	L	T	L	A	K	E	H	S	A	A	D
Template Known Secondary structure							S	S												T																T	T		S	.	.	S		S																		T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions