Job Description A0PJM3 Confidence 25.84% Date Tue Apr 3 14:51:25 BST 2012 Rank 90 Aligned Residues 53 % Identity 23% Template c2zkr4_ PDB info PDB header:ribosomal protein/rna Chain: 4: PDB Molecule:60s ribosomal protein l44e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		319	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.																			360	.	.	.	.	.					.	.	.	.	370	.	.	.	.
Predicted Secondary structure										.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Query SS confidence										.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Query Sequence		C	R	V	C	C	R	C	G	.	.	T	E	Y	L	V	S	S	S	G	R	C	V	R	D	Q	L	C	Y	Y	H	W	G	R	V	R	S	S	Q	V	A	G	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	Q	Y	T	C	.	.	.	.	C	A	A	A	P	G	S	V	G
Query Conservation										.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Alig confidence										.	.							.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template Conservation																		.	.	.
Template Sequence		R	T	F	C	K	K	C	G	K	H	Q	P	H	K	V	T	.	.	.	Q	Y	K	K	G	K	D	S	L	Y	A	Q	G	K	R	R	Y	D	R	K	Q	S	G	Y	G	G	Q	T	K	P	I	F	R	K	K	A	K	T	T	K	K	I	V	L	R	L	E	C	V	E	P	N	C	R	S	K	R	M	L	A	I
Template Known Secondary structure						T	T	T	T									.	.	.									S		S	T	T					T	T	T				S	S	S				S								S	S		B									T	T	S
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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