Job Description A0PJM3 Confidence 81.99% Date Tue Apr 3 14:51:25 BST 2012 Rank 58 Aligned Residues 119 % Identity 18% Template c2vwkA_ PDB info PDB header:dna replication Chain: A: PDB Molecule:dna polymerase; PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant Resolution 2.6 Å

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		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.					.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		P	G	I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	.	.	.	.	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	F	F
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																																.	.	.	.	.	.						.	.	.	.	.	.												.
Template Conservation																																																					.	.	.	.	.	.						.	.	.	.	.	.												.
Template Sequence		L	K	M	L	A	F	D	I	E	T	L	Y	H	E	G	E	K	F	A	E	G	P	I	L	M	I	S	Y	A	D	E	E	G	A	R	V	I	T	W	R	N	I	D	L	P	Y	V	D	V	V	S	.	.	.	.	.	.	T	E	K	E	M	.	.	.	.	.	.	I	K	R	F	L	K	V	V	K	E	K	.
Template Known Secondary structure															T	T	S		T	T		S										S	S							S	S					T	T					S	.	.	.	.	.	.						.	.	.	.	.	.												.
Template Predicted Secondary structure																																																					.	.	.	.	.	.						.	.	.	.	.	.												.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.
		483	.	.	.	.	.	.	490	.	.	.	.		.	.	.	.	.	500	.																																.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure														.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	Q	T	I	L	I	G	H	S	L	E	.	S	D	L	L	A	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	H	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A
Query Conservation														.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.									.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation					.																																																																				.
Template Sequence		D	P	D	.	V	L	I	T	Y	N	G	D	N	F	A	F	A	Y	L	K	K	R	S	E	K	L	G	V	K	F	I	L	G	R	E	G	S	E	P	K	I	Q	R	M	G	D	R	F	A	V	E	V	K	G	R	I	H	F	D	L	Y	P	V	I	R	R	T	I	N	L	P	.	T	Y	T	L	E	A	V	Y
Template Known Secondary structure				S	.					S	S	T	T	T	T													T						S	T	T	S									T	T							T	T	S													S			S	.	S
Template Predicted Secondary structure					.																																																																				.
Template SS confidence
		202	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.
		531	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	Y	L	A	Q	I	I	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	I	F	G	Q	P	K	E	K
Template Known Secondary structure				T	T		S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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