Job Description A0PJM3 Confidence 96.95% Date Tue Apr 3 14:51:25 BST 2012 Rank 34 Aligned Residues 171 % Identity 17% Template c2p51A_ PDB info PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit Resolution 1.40 Å

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		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.																									.	.	.	.	.	.	.	430	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	A	K	Q	H	V	R	D	G	R	K	E	S	L	D	G	F	V	E	T	F	K	K	E	L	S	R	D	A	Y	P	G	I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	L	T	R	V	T	V	V
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.
Template Sequence		I	S	P	I	R	D	V	W	S	T	N	L	Q	Q	E	M	N	L	I	M	S	L	I	E	R	.	.	.	.	.	.	Y	P	V	V	S	M	D	T	E	F	P	G	V	V	A	R	P	L	G	V	F	K	S	S	D	D	Y	H	Y	Q	T	L	R	A	N	V	D	S	L	K	I	I	Q	I	G	L	A	L	S
Template Known Secondary structure		S		S						T	T	T												T	T	T	.	.	.	.	.	.	S																		S			S	S	S															S
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.																		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.				.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Query Sequence		D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	F	.	.	.	F	S	A	Q	T	I	L	I	G	H
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Alig confidence																.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		D	E	E	G	N	A	P	V	E	A	C	T	W	Q	.	.	.	.	.	.	F	N	F	T	F	N	L	Q	D	D	M	Y	A	P	E	S	I	E	L	L	T	K	S	G	I	D	F	K	K	H	Q	E	V	G	I	E	P	A	D	F	A	E	L	L	I	G	S	G	L	V	L	Q	E	E	V	T	W	I	T	F
Template Known Secondary structure			T	T	S				T	T		S				.	.	.	.	.	.			B				T	T	T	S													T	T											B											T	T	T	S	S	S		T	T						S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		492	.	.	.	.	.	.	.	500																		.	.	.	.				.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Query Sequence		S	L	E	S	D	L	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	H	.	.	.	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	G	H	N	S	S	E	D	A
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.																.	.												.										.	.
Template Conservation																																																		.	.												.										.	.
Template Sequence		H	S	G	Y	D	F	A	Y	L	L	K	A	M	T	Q	I	P	L	P	A	E	Y	E	E	F	Y	K	I	L	C	I	Y	F	P	K	N	Y	D	I	K	Y	I	M	K	S	V	L	N	.	.	N	S	K	G	L	Q	D	I	A	D	D	.	L	Q	I	H	R	I	G	P	Q	.	.	H	Q	A	G	S	D	A
Template Known Secondary structure		S															S				S	S												S	S	S									T	T	T	T		.	.												.	T	T					S		T	.	.	T	S
Template Predicted Secondary structure																																																		.	.												.										.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.
		552	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	C	L	Q	L	V	M	W	K	V	R	Q
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		L	L	T	A	R	I	F	F	.	E	I	R	S
Template Known Secondary structure										.
Template Predicted Secondary structure										.
Template SS confidence
		242	.	.	.	.	.	.	.		250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions