Job Description A0PJM3 Confidence 99.53% Date Tue Apr 3 14:51:25 BST 2012 Rank 5 Aligned Residues 156 % Identity 21% Template c2p1jB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii polc-type; PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima Resolution 2.50 Å

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		410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.				.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure											.																								.	.	.
Query SS confidence											.																								.	.	.
Query Sequence		Y	A	L	D	C	E	M	C	Y	.	T	T	H	G	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	.	.	.	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	F	F	S	A	Q
Query Conservation											.																								.	.	.
Alig confidence											.																								.	.	.																										.
Template Conservation																																																															.
Template Sequence		V	V	L	D	F	E	T	T	G	L	D	P	Q	V	D	E	I	I	E	I	G	A	V	K	I	Q	G	G	Q	I	V	D	E	Y	H	T	L	I	K	P	S	R	E	I	S	R	K	S	S	E	I	T	G	I	T	Q	E	M	L	E	N	.	K	R	S	I	E	E	V	L	P	E	F	L	G	F	L	E	D	S
Template Known Secondary structure									S	S	S		T	T	T													T	T													S	S																		T	T	.																S	S
Template Predicted Secondary structure																																																															.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500										.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	L	I	G	H	S	L	E	S	D	L	L	A	L	.	.	.	.	.	.	.	.	.	K	L	I	H	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	G	H	N	S	S	E	D	A	N	A	C	L	Q
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence		.															.	.	.	.	.	.	.	.	.																						.									.											.	.	.
Template Conservation		.																																													.									.											.	.	.
Template Sequence		.	I	I	V	A	H	N	A	N	F	D	Y	R	F	L	R	L	W	I	K	K	V	M	G	L	D	W	E	R	P	Y	I	D	T	L	A	L	A	K	S	L	L	K	L	R	.	S	Y	S	L	D	S	V	V	.	E	K	L	G	L	G	P	F	R	H	.	.	.	H	R	A	L	D	D	A	R	V	T	A	Q
Template Known Secondary structure		.					T	T																																						S	.									.				T							.	.	.	S
Template Predicted Secondary structure		.																																													.									.											.	.	.
Template SS confidence
			438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.		.	.	.	.	.	.	.	.		490	.	.	.	.	.	.	.	.	.				500	.	.	.	.	.	.	.	.	.	510	.
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	M	W	K	V	R	Q	R	A	Q	I	Q	P	R	H	R
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		V	F	L	.	R	F	V	E	M	M	K	K	E	G	H	H	H
Template Known Secondary structure					.						T	T	S	T	T	T	T
Template Predicted Secondary structure					.
Template SS confidence
		512	.	.		.	.	.	.	.	520	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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