Job Description A0PJM3 Confidence 98.24% Date Tue Apr 3 14:51:25 BST 2012 Rank 22 Aligned Residues 144 % Identity 18% Template c2kzzA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: klenow fragment with normal substrate and zinc only Resolution 2.25 Å

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		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		A	Y	P	G	I	Y	A	L	D	C	E	M	C	Y	T	.	T	H	G	L	E	L	T	R	V	T	V	V	D	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	F	F	S
Query Conservation																	.
Alig confidence																	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	A	P	V	F	A	F	D	T	E	T	D	S	L	D	N	I	S	A	N	L	V	G	L	S	F	A	I	E	P	G	V	A	A	Y	I	P	V	A	H	D	Y	L	D	A	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	S	R	E	R	A	L	E	L	L	K	P	L	L	E
Template Known Secondary structure		T	T	S	S	S								S		S		T	T	T												T	T											S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.																	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		484	.	.	.	.		.	490	.	.	.	.	.	.	.	.	.	500				.	.	.	.	.	.		.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure							.													.	.	.							.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.													.	.	.							.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	T	I	L	.	I	G	H	S	L	E	S	D	L	L	A	L	.	.	.	K	L	I	H	S	T	.	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.													.	.	.							.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.													.	.	.							.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	K	A	L	K	V	G	Q	N	L	K	Y	D	R	G	I	L	A	N	Y	G	I	E	L	R	G	I	A	F	D	T	M	L	E	S	Y	I	L	N	S	V	A	G	R	H	D	M	D	S	L	A	E	R	W	L	K	H	K	T	I	T	F	E	E	I	A	G	K	G	K	N	Q	L	T	F	N	Q	I	A
Template Known Secondary structure			T	T	S					S	S										T	T	T																			T	T	S	S			S									S													S	S	T	T				G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
						544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W	K	V	R	Q
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		L	E	E	A	G	R	Y	A	A	E	D	A	D	V	T	L	Q	L	H	L	K	M	W	P	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions