Job Description A0PJM3 Confidence 81.88% Date Tue Apr 3 14:51:25 BST 2012 Rank 59 Aligned Residues 183 % Identity 13% Template c2gv9B_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase Resolution 2.68 Å

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		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.			.	410	.	.	.	.	.	.	.	.	.	420	.	.												.	.	.	.	.
Predicted Secondary structure																																																		.	.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	Y	T	C	C	A	A	A	P	G	S	V	G	C	Q	V	A	K	Q	H	V	R	D	G	R	K	E	S	L	D	G	F	V	E	T	F	K	K	E	L	S	R	D	A	Y	P	G	.	.	I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	.	.	.	.	.	.	.	.	.	.	.	L	E	L	T	R
Query Conservation																																																		.	.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	W	Y	R	L	K	P	G	R	N	N	T	L	A	Q	P	R	A	P	M	A	F	G	T	S	S	D	V	E	F	N	C	T	A	D	N	L	A	I	E	G	G	M	S	D	L	P	A	Y	K	L	M	C	F	D	I	E	C	K	A	G	G	E	D	E	L	A	F	P	V	A	G	H	P	E	D	L	V	I	Q
Template Known Secondary structure									B	T	T	T	B							G	G	G			B	S		S							G	G	G					S	S			S																	S	S		T	T	S				T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		428	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.																						.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure								.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	V	V	D	A	.	D	M	R	V	V	Y	D	T	F	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P	Q	V	Q	A	I	L	L	S	F	F	S	A	Q
Query Conservation								.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	C	L	L	Y	D	L	S	T	T	A	L	E	H	V	L	L	F	S	L	G	S	C	D	L	P	E	S	H	L	N	E	L	A	A	R	G	L	P	T	P	V	V	L	E	F	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	E	M	L	L	A	F	M	T	L	V	K	Q	Y	G	P	E
Template Known Secondary structure									T	T	T												S															T	T										S	S	.	.	.	.	.	.	.	.	.	.	.	.	.																		S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.														.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		486	.	.	.	490	.	.	.	.	.		.	.	.								.	500	.	.	.	.	.	.																																		.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure												.				.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.				.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	L	I	G	H	S	L	E	S	.	D	L	L	.	.	.	.	.	.	.	A	L	K	L	I	H	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R
Query Conservation												.				.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.										.				.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation		.																																																																													.
Template Sequence		.	F	V	T	G	Y	N	I	I	N	F	D	W	P	F	L	L	A	K	L	T	D	I	Y	K	V	P	L	D	G	Y	G	R	M	N	G	R	G	V	F	R	V	W	D	I	G	Q	S	H	F	Q	K	R	S	K	I	K	V	N	G	M	V	N	I	D	M	Y	G	I	I	T	D	K	I	K	L	S	.	S	Y
Template Known Secondary structure		.					S	S	T	T	T	T											T	T	T					T	T	S	S	S	B	S	S	S								S	S			T	T	S							B	T	T	B											T	T				S	.
Template Predicted Secondary structure		.																																																																													.
Template SS confidence
			461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.		.	.
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.																				.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	G	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	E	D	A	N	A	C	L	Q	L	V	M	W
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.
Template Sequence		K	L	N	A	V	A	E	A	V	L	K	D	K	K	K	D	L	S	.	.	Y	R	D	I	P	A	Y	Y	A	T	G	P	A	Q	R	G	V	I	G	E	Y	C	I	Q	D	S	L	L	V	G	Q	L	F	F	K
Template Known Secondary structure		S																		.	.	T	T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.			.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions