Job Description A0PJM3 Confidence 99.52% Date Tue Apr 3 14:51:25 BST 2012 Rank 6 Aligned Residues 144 % Identity 17% Template c2gbzA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.						.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.								.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																	.																	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence																	.																	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		Y	P	G	I	Y	A	L	D	C	E	M	C	Y	T	T	.	H	G	L	E	L	T	R	V	T	V	V	D	A	D	M	R	.	.	.	.	.	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	.	.	.	.	.	.	.	S	G	V	T	E	A	D	V	A	K	T	S	I	T	L	P
Query Conservation																	.																	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence																	.																	.	.	.	.	.																					.	.	.	.	.	.	.											.
Template Conservation																																																																												.
Template Sequence		N	D	R	L	I	W	I	D	L	E	M	T	G	L	D	T	D	R	D	S	I	I	E	I	A	T	I	V	T	D	A	Q	L	N	V	L	A	E	G	P	E	L	A	I	A	H	S	L	E	T	L	E	A	M	D	E	W	N	R	N	Q	H	R	R	S	G	L	W	Q	R	V	L	D	S	.	Q	V	T	H	A
Template Known Secondary structure													S		S		T	T	T													T	T																					T	S		S										T									.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.						.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.									.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		Q	V	Q	A	I	L	L	S	F	F	S	A	.	.	.	.	.	Q	T	I	L	I	G	H	S	L	E	S	D	L	L	A	L	K	L	.	.	.	.	.	.	.	.	I	H	S	T	V	V	D	T	A	V	L	F	P	H	Y	L	G	F	P	Y	K	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q
Query Conservation														.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																			.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	E	A	Q	T	V	A	F	L	G	E	W	I	R	A	G	A	S	P	M	C	G	N	S	I	C	Q	D	R	R	F	L	H	R	Q	M	S	R	L	E	R	Y	F	H	Y	R	N	L	D	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	K	E	L	A	R	R	W	A	P	A	V	A	S
Template Known Secondary structure												T	T	T			T	T	S	S					S	S																			S		S							.	.	.	.	.	.	.	.	.	.	.	.	.											G	G	G	G	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.														.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		540			.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		D	.	.	S	Q	D	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W	K	V	R
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		G	F	A	K	S	S	A	H	T	A	L	S	D	V	R	D	S	I	D	E	L	R	H	Y	R	Q
Template Known Secondary structure		T					S			S																	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions