Job Description A0PJM3 Confidence 93.73% Date Tue Apr 3 14:51:25 BST 2012 Rank 44 Aligned Residues 151 % Identity 19% Template c2dtuA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog Resolution 2.37 Å

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		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.									.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.											.																																						.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.											.																																						.	.	.	.	.	.	.	.	.
Query Sequence		G	I	Y	A	L	D	C	E	M	C	Y	T	T	H	G	.	.	.	.	.	.	.	.	L	E	L	T	R	V	T	V	V	D	.	A	D	M	R	V	V	Y	D	T	F	V	K	P	D	N	E	I	V	D	Y	N	T	R	F	S	G	V	T	E	A	D	V	A	K	T	S	I	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.	.	.	.	.	.											.																																						.	.	.	.	.	.	.	.	.
Alig confidence										.							.	.	.	.	.	.	.	.											.																																						.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		R	V	A	N	F	D	I	E	.	V	T	S	P	D	G	F	P	E	P	S	Q	A	K	H	P	I	D	A	I	T	H	Y	D	S	I	D	D	R	F	Y	V	F	D	L	L	N	S	P	Y	G	N	V	E	E	W	S	I	E	I	A	A	K	L	Q	E	Q	G	G	D	E	V	P	S	E	I	I	D	K	I	I
Template Known Secondary structure										.				S	S	S	S			T	T	T			S										T	T	T	T											T	T													S		G	G	G	T						T	T	T	G	G	G
Template Predicted Secondary structure										.
Template SS confidence
		109	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
							470	.	.	.	.	.	.	.	.	.	480	.	.				.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500																															.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure		.	.	.	.	.														.	.	.														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.														.	.	.														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	T	L	P	Q	V	Q	A	I	L	L	S	F	F	.	.	.	S	A	Q	T	I	L	I	G	H	S	L	E	S	.	D	L	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	H	S	T	V	V	D	T
Query Conservation		.	.	.	.	.														.	.	.														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.														.	.	.				.										.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		Y	M	P	F	D	N	E	K	E	L	L	M	E	Y	L	N	F	W	Q	Q	K	T	P	V	.	I	L	T	G	W	N	V	E	S	F	A	I	P	Y	V	Y	N	R	I	K	N	I	F	G	E	S	T	A	K	R	L	S	P	H	R	K	T	R	V	K	V	G	E	I	I	T	L	F	G	I	S	V	L	D	Y
Template Known Secondary structure						S	S															T			S	.					S	S	T	T	T	T													S						G	G	G	S	T	T	S						S	S	S					T	T
Template Predicted Secondary structure																										.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		511	.	.	.	.	.	.	.	.	520	.	.	.		.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.														.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure															.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	L	F	P	H	Y	L	G	F	P	Y	K	.	R	S	L	R	N	L	A	A	D	Y	L	A	Q	I	I	Q	D	S	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	N	S	S	E	D	A	N	A	C	L	Q	L	V	M	W
Query Conservation															.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	L	Y	K	K	F	S	F	T	N	Q	P	S	Y	S	L	D	Y	I	S	E	F	E	L	N	V	G	K	L	K	Y	D	G	P	I	S	K	L	R	E	S	N	H	Q	R	Y	I	S	Y	N	I	I	A	V	Y	R	V	L	Q	I	D	A	K
Template Known Secondary structure									S					S													S			S				S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions